Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 603 1e-167 SEQ58105 93.3 5e-14 >SEQ17521 Length=26855 Score = 603 bits (668), Expect = 1e-167 Identities = 1209/1781 (68%), Gaps = 20/1781 (1%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||||||| | |||| | |||||||| || ||| ||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || |||| |||||| || | ||| |||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 || | || | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 62276 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || |||| | || ||||||||| || ||| || | ||| ||| || || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||| | ||| || | | | || ||| |||| | ||||| |||| || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 |||||||| || ||||||| | ||| ||||| ||| | ||||| | || || Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 |||||| || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 62513 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | || || ||||| | ||||| ||||| ||| |||||| ||| ||||| | Sbjct 3522 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 3465 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || | | |||| | ||| || | || | | || | ||| |||| Sbjct 3464 GGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 3406 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || | ||| ||| || ||||| |||| || ||| || || || || || |||||||| Sbjct 3405 TGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 3346 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 || || ||||| |||| | |||| ||||| || ||| | || || Sbjct 3345 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 3286 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 3285 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 3226 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| || || Sbjct 3225 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTT 3166 Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT 62926 | | || | ||| || || || | || ||||| | || |||| | Sbjct 3165 TTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATT 3106 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 ||||||||| ||||| |||| ||| || | |||||| || ||||| |||| | | Sbjct 3105 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 3046 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 |||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 3045 GTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 2986 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||||| ||||||| | ||| || || | ||||||||||| || ||||||| || | Sbjct 2985 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 2926 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 ||||| ||| || ||||| | ||| | || |||| | | || | || ||| || Sbjct 2925 TTCTACAATAGCCTTCCATAAAACTTGTGCTTTTACTT--GTTTAACAAATCTTTTTTCA 2868 Query 63167 TTCGTATAGAGTATACAATCG--TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 ||| ||| | | || | ||| ||||| ||||||||| || |||| | |||| Sbjct 2867 TTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 2808 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 2807 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 2748 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 || || ||||| | ||| ||| | || || | || | ||| || || || |||||| Sbjct 2747 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTC 2688 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 ||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| || | Sbjct 2687 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 2628 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 2627 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 2568 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 |||||||| | || || ||||||| |||||| || || | ||| | || | || Sbjct 2567 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 2508 Query 63525 CGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 || ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 2507 CGGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 2449 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| | |||||||| || || || || || ||||| ||||| | || ||||| Sbjct 2448 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 2389 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| ||| | | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 2388 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 2329 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || ||||| | || |||||| || | ||| ||||| || || || | ||| || || Sbjct 2328 CTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACC 2269 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 | || |||||||||| ||| || || ||||| ||| ||| Sbjct 2268 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCAGCAA 2228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 ||||||| ||||||||||||| ||| |||||||||||||| || || || | ||||| | Sbjct 429 GTTTTTTAGTTTCCTTGTGTAAATTAGATATGGCTATTCTAGCTGCAAGTACAGCATAGT 370 Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 | ||||| | |||| ||||| ||| | || || |||| | || | || || | Sbjct 369 CAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTCAACAG 310 Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 | || ||||| ||| | ||| |||||| |||| Sbjct 309 TCGTCACTCCTGAATACAAACCTCCAATAACTTTCA 274 >SEQ58105 Length=99015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || ||||| | ||| || || |||| ||||| || || |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||| | || ||| || || | || ||||| || |||||||| | Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCT 17260 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| || ||||| || || || || || || || ||||| || ||||| | Sbjct 17259 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATG 17200 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTA-TCCACTTTTGAGCCCAATCGG 33780 | | || | |||||| | || | | | || | |||| | | | ||||| || | Sbjct 17199 CTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTG 17140 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||||||||| |||||||||| |||||||| |||||||| Sbjct 17139 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629288875997520