Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 650 0.0 SEQ58105 118 1e-21 >SEQ17521 Length=26855 Score = 650 bits (720), Expect = 0.0 Identities = 1216/1774 (69%), Gaps = 22/1774 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| || | ||||| ||| | ||| || | | ||||||||| || ||| Sbjct 3998 TCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCTGTT 3939 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| |||| | |||| | |||||||| || |||||||| | || | || | | Sbjct 3938 TTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGTTCA 3879 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | || |||||||| |||||||| |||||||| || || ||||| Sbjct 3878 GCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCCATC 3819 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | || ||| ||| || ||||| || || ||||| | | | | |||| | Sbjct 3818 TGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTAATATCTTTG 3759 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | || | || |||| |||||||||| | ||| ||| || |||||| Sbjct 3758 GGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCATGTCA 3699 Query 37087 TTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | ||||| || || ||| | | |||||||| || || | || ||||| |||| Sbjct 3698 TCGTCCCACAAAT--CTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTGAA 3641 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | ||||| |||||||||| |||| |||||||| |||| ||||||||| ||| |||| Sbjct 3640 ATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTCAT 3581 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||| | | ||| || | |||||||| || ||||| || || | ||| || ||| | Sbjct 3580 TATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATTAC 3521 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | ||||||| || ||| | | ||| || || ||||||||| | ||| || || Sbjct 3520 GAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGGCG 3461 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 |||| |||||||||| |||| | ||| |||| || | ||| | | | ||||| Sbjct 3460 TCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATGAAC 3401 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||| ||| | | | |||| ||| || |||| ||| | || | ||||| || | Sbjct 3400 TATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGATAG 3341 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 | || || || ||| ||||| | ||||| ||| || || | | |||| || | Sbjct 3340 TCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCATCA 3281 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | ||| ||||||| ||||| || || || |||||||| ||||||||| | |||| | Sbjct 3280 GCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTGG 3221 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | | |||| |||||||||||||||| |||||| ||||||||||| |||| Sbjct 3220 AGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTTGGG 3161 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTT-----ATTATTAAC 37679 || ||||| |||| | | | ||||| || || || |||||| || ||| || Sbjct 3160 TTATAATTTTTGTAACTTCTTTTAACTTTTC-AAAAT-TGTACGTTCTATCATCATTTAC 3103 Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739 ||| || |||| | |||||| ||| ||||||||| || ||||||||| | | | Sbjct 3102 AAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTGTA 3043 Query 37740 TTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 || || || |||||||| |||||||| || |||||||||| | ||| | ||||| Sbjct 3042 TTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTACT 2983 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 ||| | ||||| |||||||| |||| || | || || ||| ||| | ||| || || Sbjct 2982 CTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTTC 2923 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGTTTC 37919 | ||||| ||||||||| | |||||| || | | || | | || ||| ||| Sbjct 2922 TACAATAGCCTTCCATAAAACTTGTGCTTTTAC--TTGTTTAACAAATCTTTTTTCATTC 2865 Query 37920 GTATTCTATATATAATTTG--TTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 || || | |||| | | ||| || | ||||| ||| || || ||||| Sbjct 2864 TCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGACAG 2805 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 || |||||||| | | ||| | ||||| |||||| || | || |||||| ||||| Sbjct 2804 TCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCT 2745 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 |||| |||||| ||| ||| || || | | || | |||||| || || ||||||| Sbjct 2744 GGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTCTTT 2685 Query 38098 CTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 || || | || ||| || || | ||| | ||||||||||||| ||| | | | ||| Sbjct 2684 -TTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGC 2626 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 ||||| | || | ||| || |||| | |||||| ||||| | ||||||| |||||| Sbjct 2625 CCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAA 2566 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || || | ||||| ||| || ||| | || | |||| | ||||| |||||||| Sbjct 2565 CATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTCG 2506 Query 38277 TATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTT 38335 ||| | | | | || || || ||||||||| ||| ||||| || || ||||||| Sbjct 2505 GATA-CAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTT 2447 Query 38336 TTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAG 38395 | | || ||| |||| || || ||||||||||| || || | | || |||||| | Sbjct 2446 TCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATG 2387 Query 38396 ACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455 ||| |||||| |||||| | || |||||| |||||| || || |||| | | Sbjct 2386 ACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATACT 2327 Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 | || ||||| |||| || || | ||| | ||| || || | || || ||||| | Sbjct 2326 TCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACCAA 2267 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||| | ||||||||||||||||||||| || Sbjct 2266 TAGCTACACGCATTAGCATATGTTGTGGTCTCTC 2233 >SEQ58105 Length=99015 Score = 118 bits (130), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || |||||| || || || || ||||| | ||| || || |||| |||||| ||| Sbjct 17305 ATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATA 17246 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || || || ||||| || |||||||||||||| | | |||| Sbjct 17245 GAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCTACAATACGTTCT 17186 Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | | ||||| | ||||||| | |||||| || || |||||||| || Sbjct 17185 CCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACA 17126 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 || || ||||||||||| |||||||| Sbjct 17125 CAAGGCAAAGTTTCTATAGCATTAAATAA 17097 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 ||||| || ||||||| |||||||| || |||| ||||||||| |||||||| || Sbjct 16456 TATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAAC 16397 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 |||||||| ||| ||||| | | || || || |||||| ||| ||| ||| Sbjct 16396 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTT 16337 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 ||||| ||||| |||||| | |||||||||||||| | ||||| || || Sbjct 16336 TCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAA 16284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468131479286960