Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 609 3e-169 SEQ58105 102 1e-16 >SEQ17521 Length=26855 Score = 609 bits (674), Expect = 3e-169 Identities = 1207/1777 (68%), Gaps = 20/1777 (1%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||||||||| | |||| | |||||||| || ||| ||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || |||| |||||| || | ||| |||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 || | || | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 65069 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 || |||| | || ||||||||| || ||| || | ||| ||| || || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 ||||| | ||| || | | | || ||| |||| | ||||| | || || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 ||||||||| || ||||||| | ||| ||||| ||| | ||||| | || || Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 65305 |||||| || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 65306 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | || || ||||| | ||||| ||||| |||| |||||| ||| ||||| | Sbjct 3522 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 3465 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 || ||| | ||| || | || | | || | ||| |||| Sbjct 3464 GGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 3406 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || | || ||| || ||||| |||| |||||| || || || || || |||||||| Sbjct 3405 TGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 3346 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 || || || || |||| | |||| ||||| || ||| | || || Sbjct 3345 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 3286 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 3285 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 3226 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| || || Sbjct 3225 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTT 3166 Query 65663 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT 65719 | | || | ||| || || || | || ||||| | || ||||| | Sbjct 3165 TTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATT 3106 Query 65720 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 ||||||||| ||||| |||| ||| || | |||||| || ||||| |||| | | Sbjct 3105 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 3046 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 |||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 3045 GTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 2986 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 ||||||| ||||||| | ||| || || | ||||||||||| || ||||||| || | Sbjct 2985 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 2926 Query 65900 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 65959 ||||| ||| || ||||| | ||| | || |||| | | || | |||||| || Sbjct 2925 TTCTACAATAGCCTTCCATAAAACTTGTGCTTTTACTT--GTTTAACAAATCTTTTTTCA 2868 Query 65960 TTCGTATAGTGTATACAATCG--TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 ||| ||| | | | || | ||| ||||| ||||||||| || |||| |||||| Sbjct 2867 TTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 2808 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 2807 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 2748 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 || || ||||| | ||| ||| || || || | || | ||| || || || |||||| Sbjct 2747 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTC 2688 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 ||||| ||||| | ||| | | | ||| ||||||| ||||| || |||| || | Sbjct 2687 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 2628 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 2627 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 2568 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 |||||||| | || ||||| ||| |||||| || || | ||| | | || | || Sbjct 2567 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 2508 Query 66318 CGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 || ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 2507 CGGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 2449 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| | || ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 2448 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 2389 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 |||| ||| | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 2388 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 2329 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 || ||||| | || |||||| || | ||| ||||| || || || | ||| || || Sbjct 2328 CTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACC 2269 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 | || |||||||||| ||| || || ||||| ||| Sbjct 2268 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 >SEQ58105 Length=99015 Score = 102 bits (112), Expect = 1e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || |||||||| || | |||||| || || ||||| || || || ||| Sbjct 17281 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 17222 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATGTA 36335 || || ||||| || ||||| || | || | |||||| | ||| | | | || | Sbjct 17221 ATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCA 17162 Query 36336 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||| | | | ||||| || ||||||||||| |||||||||| || |||||||||||| Sbjct 17161 ATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 17102 Query 36395 AA 36396 || Sbjct 17101 AA 17100 Score = 93.3 bits (102), Expect = 6e-14 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 || ||||| | ||| || || |||| || || ||||| |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657620272161560