Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 179 4e-40 SEQ17521 161 1e-34 seq2773 147 2e-30 SEQ58356 134 1e-26 >SEQ21942 Length=42535 Score = 179 bits (198), Expect = 4e-40 Identities = 342/501 (68%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 20797 CCGACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCA 20856 |||| || || || || || || || || || ||||||||||||||||| || || || Sbjct 35103 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCG 35044 Query 20857 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAACGTTTGGCGCACGATC 20916 ||||||||||| |||| || | |||| || || | | ||| | | | | Sbjct 35043 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACC 34984 Query 20917 TTGTCGTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACT 20976 || || | | | | ||||| || | | ||||||||||||||| || || | || Sbjct 34983 TTATCATCAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACC 34924 Query 20977 TTGAGATGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGT 21036 || |||| || | || ||| | ||| ||||| ||||||||||||||||| ||| Sbjct 34923 TTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGT 34864 Query 21037 TCGTTCCATGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATG 21096 |||||||| | | | ||| ||||| ||||| |||| || ||||| || ||||| || Sbjct 34863 TCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATA 34804 Query 21097 GCCACCTTAAAGTCGGCACGGCCCGC-GCACGAACGTTGCAACGCTTCGAAACTGCCCGG 21155 | || || ||||| | | |||||| ||| || |||||||| |||| |||||| || Sbjct 34803 GAAACTTTGAAGTCCTCTC-GCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTC 34745 Query 21156 GACACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAA 21215 || ||| | ||||| || || || || || || ||||| | || ||||| | Sbjct 34744 GATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAG 34685 Query 21216 CAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACC 21275 | ||| | | ||||| |||| || ||||| || || || | | || || ||||| Sbjct 34684 AAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACC 34625 Query 21276 CCATTCGACAAAGTATGCTCC 21296 ||| || ||||| || ||||| Sbjct 34624 CCACTCCACAAAATAAGCTCC 34604 >SEQ17521 Length=26855 Score = 161 bits (178), Expect = 1e-34 Identities = 485/743 (65%), Gaps = 7/743 (1%) Strand=Plus/Minus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACG 153129 |||| |||||||||||||| || || ||||| ||||| | | ||| ||| | Sbjct 3655 GGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATG 3596 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 ||||||| || || || || ||||| ||||| || | ||||| ||||| ||||| Sbjct 3595 GTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCA 3536 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGA-CCAGTCC 153248 |||| |||||||| | ||| ||||| ||| || |||| || | | ||| ||| Sbjct 3535 GTAGCAGAGAATTACGAATTCCATGTTTAGCTAT-TTTTTCTTTAAGAGCAACCCAATCC 3477 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 || | ||| || || |||||||| ||| ||||||| |||||||||||| | Sbjct 3476 CAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGA 3417 Query 153309 CTACCGGCAAACGTGCTATACGGCTCACT-GTCAGACGCCAGTTTCAAACTGGCATCGAG 153367 ||||| || | | ||||| ||| || | ||| | || | || || || | Sbjct 3416 CTACCTTCATATGAACTATA-AACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAA 3358 Query 153368 CGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCAC 153427 || | | ||| | ||| || | ||||||| ||| | || | || || || | Sbjct 3357 AGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTC 3298 Query 153428 GTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGG 153487 || || ||||| || ||||| ||||| || |||||||| | ||||| ||||| || Sbjct 3297 ATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGG 3238 Query 153488 ACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAAT 153547 | ||| |||||||| || ||||| || || ||| ||||| ||||| || ||||| Sbjct 3237 TCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAAT 3178 Query 153548 TTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT 153607 |||||||| | | | ||| || | ||| || ||||| |||| Sbjct 3177 TTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGT 3118 Query 153608 TC---CATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTC 153664 || ||| | | | | | | || | ||||| || || || || || || || ||| Sbjct 3117 TCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTC 3058 Query 153665 GTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCA 153724 || | |||| ||||||||| | ||| | ||| || ||||| || || Sbjct 3057 ATCTACTGATGTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAG 2998 Query 153725 ATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGT 153784 ||| | ||||| || || | |||||| | || ||||||| |||| |||| ||||| || Sbjct 2997 ATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGT 2938 Query 153785 TTCGGCTTGAATTTCTATAATAG 153807 ||| |||| ||||| ||||| Sbjct 2937 TTCAACTTGTGCTTCTACAATAG 2915 >seq2773 Length=85211 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||| || || || ||||||| |||||| || ||||||||||| ||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | ||||| |||||||| || || |||| ||||| |||||||||||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||||| | ||| | ||| || | ||||| || Sbjct 66272 ATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAAC 66214 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || || | || || || ||||| ||||| Sbjct 66213 CTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||| || || || ||||||| |||||| || ||||||||||| ||||| | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | ||||| || ||||| |||||| |||| || || || || || ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| ||| | | || | ||| || | || || || Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| ||||| || || ||||||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCATA 66621 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| |||||||||||||||||||| || || | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || || |||||| | || || |||||||| || ||||| Sbjct 66560 AGGGTACGTCCA-TCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGG 66502 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| |||| | ||| | || || | ||||| || Sbjct 66501 GATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTAC 66442 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||| || || | ||||| || || |||||||| Sbjct 66441 TTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || | ||||| || |||||||||||||| || || || | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| || || || |||||| |||| || || || || || ||||| Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || |||||| ||| | | || | |||||| | || || || Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 67125 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | ||||| || || ||||||||| Sbjct 67124 TCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCATA 67077 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| ||||| | ||| || |||||||| | || || |||||||||||||| || || Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || | | ||||| || ||||| |||||| |||| || || || || || || Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 ||| |||||||| ||||| |||||| ||| | | || | ||| || | || || Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||||| || || | || || || || || ||||| Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||||| || ||||||||||||||||| || || Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| || || || |||||| |||| || || || || || ||||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| ||| | | || | ||| || | || || || Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66897 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || || || |||||||| Sbjct 66896 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 >SEQ58356 Length=38410 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||| || | || | |||||||| || ||||| || || ||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| ||||||||||||||| |||||| |||||||||||| || || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| |||||| ||||| | ||| | || |||| || |||||| Sbjct 35160 ATACCCTCTTTATC-TTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCAC 35218 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || || | ||||| |||||||| ||||| Sbjct 35219 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495647560472800