Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 646 1e-180 SEQ58105 102 1e-16 >SEQ17521 Length=26855 Score = 646 bits (716), Expect = 1e-180 Identities = 1218/1775 (69%), Gaps = 16/1775 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||||||| | |||| | || ||||| || ||| ||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || |||| |||||| || | ||| |||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 || | || | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 78948 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || |||| | || ||||||||| || ||| || | ||| ||| || || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || || | ||| || | | | || ||| |||| | ||||| | || || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||||||||| || ||||||| | ||| ||||| ||| ||||||| | ||||| Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 |||||| || | || || || || ||||||||||||||||| |||| | | | ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 79185 TCTAAGACCGTATG-ATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243 | || || | | | || ||||| ||||| |||| |||||||||| ||||||| | Sbjct 3522 ACGAATTCCATGTTTAGCT-ATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGG 3464 Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCCTGTGTAT 79302 | |||||| | |||| |||| | ||| || | ||| | | | | ||| ||| Sbjct 3463 GCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATAT 3405 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 | |||| ||| || || || ||||||||||| || || || || ||||||||||| Sbjct 3404 GAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAG 3345 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 || || || || |||| | || | ||||| | || ||| | || || Sbjct 3344 ATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGC 3285 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | || Sbjct 3284 ATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATA 3225 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 || || ||| ||||||||||| ||||||||||| | ||||||||||||||| || || Sbjct 3224 TTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTT 3165 Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC---CATCTATT 79599 | ||| | ||| || || |||| || ||||| | || |||| || Sbjct 3164 TGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATTT 3105 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| ||||| || | ||| || | |||||| || ||||| |||| | | Sbjct 3104 ACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTG 3045 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || |||||| || || || |||||||| ||||| ||||||| ||||| |||||| Sbjct 3044 TATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTA 2985 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 |||||| ||||||| | ||| || || | ||||| ||||| || ||||||| || | | Sbjct 2984 CTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCT 2925 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGACTTGTATCTCTTTTCTCT 79838 |||| ||| || ||||| | ||| | || |||| || | | |||| ||||| | Sbjct 2924 TCTACAATAGCCTTCCATAAAACTTGTGCTTTTACTTGTTTAACAA-ATCTTTTTTCATT 2866 Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 || || | | ||| | ||| ||||| ||||||||| ||| | || |||||||| Sbjct 2865 CTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGACA 2806 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 || | ||||||||||| ||| | | ||| | | |||| ||||||||| | ||| Sbjct 2805 GTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATC 2746 Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 || ||||| | ||| ||| | || || | || | || || || || |||||||| Sbjct 2745 TGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTCTT 2686 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 ||| ||||| | ||| | | | ||| |||||||| ||||| || |||| || | | Sbjct 2685 TTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGC 2626 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| || Sbjct 2625 CCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAA 2566 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 |||||| | || ||||| ||| |||||| || || | ||| | | || | || || Sbjct 2565 CATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTCG 2506 Query 80199 AATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 ||| || ||| || || || || ||||| |||||| || || || ||| ||| Sbjct 2505 GATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTT 2447 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 | | || ||||| || ||||| || || ||||| ||||| | || ||||| | Sbjct 2446 TCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATG 2387 Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377 ||| ||| | | ||| | ||| |||||| |||||| ||||| || || | | Sbjct 2386 ACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATACT 2327 Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTA 80437 | ||||||| || |||||| || | ||| ||||| || || || | ||| || || | Sbjct 2326 TCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACCAA 2267 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 || |||||||||| ||| || || ||||| ||| Sbjct 2266 TAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 >SEQ58105 Length=99015 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||| || || || || || | || ||||| || |||||||| | Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCT 17260 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||| || || ||||| || || || || || || ||||| || ||||| | Sbjct 17259 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATG 17200 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGT--CATGTA-TCCACTTTTGAGCCCAATCGG 50158 | |||| | |||||| | | || | | | || | |||| | | | ||||| || | Sbjct 17199 CTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTG 17140 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||||||||| |||||||||| |||||||| |||||||| Sbjct 17139 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 ||| || || |||| |||| ||| |||||||| || |||||||| || || || || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || ||||| | ||| || || |||| ||||| || || |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717665822320760