Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 125 7e-24 >SEQ58105 Length=99015 Score = 125 bits (138), Expect = 7e-24 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 |||||||||| |||||| || || ||||| || || || ||||| | ||| || || Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAA--GTCAAACCAGGCATGAGTCCACGCTT 17262 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 ||||||||||| || | |||||| || || || || || ||||| || || ||||| Sbjct 17261 CTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAA 17202 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 |||| | ||||||||||| | ||| ||||| | | ||||||| | ||||| || Sbjct 17201 TGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTC 17142 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | || ||||||| | || || ||||| |||||||||||||| Sbjct 17141 TGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 17097 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||||||||| ||||| | || | |||||||||||||| | |||||||| ||||| || Sbjct 16460 AATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTG 16401 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 || ||||| ||| |||| || || | ||| || || |||||| || | | Sbjct 16400 GAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAG 16341 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 ||||||||| || || |||||| || ||||||||||| | | || |||||| || | Sbjct 16340 ATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATG 16281 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 | ||| || || | ||| |||||| | |||||||| Sbjct 16280 TCTCTCACAATCCTTTAAACTTTCCCAATCCGGTAAATCCT 16240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479325274340600