Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 116 4e-21 >SEQ58105 Length=99015 Score = 116 bits (128), Expect = 4e-21 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 |||||||||| |||||| || || ||||| || || || ||||| | ||| || || Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAA--GTCAAACCAGGCATGAGTCCACGCTT 17262 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||||||||||| || | ||| || || || || || || ||||| || || ||||| Sbjct 17261 CTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAA 17202 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 |||| | ||||||||||| | ||| ||||| ||| ||||||| | ||||| || Sbjct 17201 TGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTC 17142 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || ||||||| | || || ||||| || ||||| ||||| Sbjct 17141 TGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 17097 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||||||||| ||||| | || | |||||||||||||| | ||||| || ||||| || Sbjct 16460 AATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTG 16401 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 || ||||| || |||| || || | ||| ||||| |||||| || | | Sbjct 16400 GAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAG 16341 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||||| ||||| |||||| || ||||||||||| | | || |||||| || | Sbjct 16340 ATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATG 16281 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | ||| || || | ||| |||||| | |||||||| Sbjct 16280 TCTCTCACAATCCTTTAAACTTTCCCAATCCGGTAAATCCT 16240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478187030684760