Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2773 93.3 3e-14 >seq2773 Length=85211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| |||| |||||| | || || | |||||| || ||||| Sbjct 66812 TCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAG 66753 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | ||||||||| || | || | ||||| || || ||| |||| || | Sbjct 66752 ATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTC 66693 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||| || || || || || | || ||||| || || || || ||||||||| Sbjct 66692 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACA 66633 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 66632 AAAATTTGCAT 66622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | |||||| || |||| || || | || |||| ||| || || ||||| Sbjct 67269 CTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAA 67210 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | ||||||||| || | || | ||||| || || ||| ||||||| | Sbjct 67209 GATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATT 67150 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| || || || || | || || || || || ||||| |||||||| Sbjct 67149 CTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCAC 67090 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 67089 AAAAATTTGCAT 67078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381057448863222