Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 600 2e-166 SEQ58105 102 1e-16 >SEQ17521 Length=26855 Score = 600 bits (664), Expect = 2e-166 Identities = 1199/1773 (68%), Gaps = 12/1773 (1%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || || | |||||| || || | | | ||| | ||| ||||||| ||| ||||||||| Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||||||||| | |||| | |||||||| || ||| ||||| ||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||| || || || | ||||||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 71030 || | || | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 71031 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || |||| | || ||||||||| || ||| || || ||| |||||| || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || || | ||| || | | | || ||| |||| | |||||| | || || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 ||||||||| || ||||||| | ||| ||||| ||| | ||||| | || || Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 |||||| || | || || || || ||||| || |||||||| |||| | ||| ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 71268 TCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 | || |||||| ||||| ||||| |||| |||||| ||| ||||| | || Sbjct 3522 ACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGG 3463 Query 71328 TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGCATATG 71386 || || | ||| | | | | ||| |||||| Sbjct 3462 CGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATATG 3404 Query 71387 TATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAA 71446 | || ||| ||||| || |||| |||||| || || || || ||||| ||||| | Sbjct 3403 AACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGA 3344 Query 71447 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA 71506 | || || || |||| | || | ||||| || ||| | || || | Sbjct 3343 TAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCA 3284 Query 71507 AGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTAT 71566 || | ||| || || ||||| ||||| || |||||||| || ||||| |||| | ||| Sbjct 3283 TCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATAT 3224 Query 71567 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 71626 | || ||| ||||||||||| ||||||||||| | ||||||||||||||| || ||| Sbjct 3223 TGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTT 3164 Query 71627 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTATTA 71683 | ||| | ||| || || |||| || ||||| | ||| |||| ||| Sbjct 3163 GGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATTTA 3104 Query 71684 CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCAT 71743 |||||| ||||| |||| ||| || | |||||| || ||||| |||| | | | Sbjct 3103 CAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTGT 3044 Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803 ||| || ||||| || || ||||||||||| || || ||||||| ||||| ||||||| Sbjct 3043 ATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTAC 2984 Query 71804 TCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 71863 ||||| ||||||| | ||| || || | || || ||||| || ||||||| || | || Sbjct 2983 TCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTT 2924 Query 71864 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTT 71923 ||| ||| || ||||| | ||| | || |||| | || |||| ||||| | | Sbjct 2923 CTACAATAGCCTTCCATAAAACTTGTGCTTTTACTTGTTTAACAAATCTTTTTTCATTCT 2864 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATT 71983 | || | | ||| | ||| ||||| ||||||||| || | || |||||||| | Sbjct 2863 CATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGACAGT 2804 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 ||| ||||||||||| ||| | | ||| | | |||| ||||||||| | ||| | Sbjct 2803 CATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCTG 2744 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 72103 | ||||| | ||| ||| | || || | || | || || || || |||||||||| Sbjct 2743 GTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTCTTTT 2684 Query 72104 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 | ||||| | ||| | | | ||| |||||||| ||||| || |||| || | | | Sbjct 2683 TCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGCCC 2624 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 | || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| |||| Sbjct 2623 CTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAACA 2564 Query 72224 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 72283 |||| | || ||||| ||| ||||||| || || | ||| | | || | || || | Sbjct 2563 TTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTCGGA 2504 Query 72284 TATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 72342 || | || ||| || || || || ||||| |||||| || || || ||| |||| Sbjct 2503 TACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTTTC 2445 Query 72343 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 72402 | || ||||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 2444 AGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATGAC 2385 Query 72403 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 | ||| | | ||| | ||| |||||| |||||| ||||| || || | || Sbjct 2384 AATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATACTTC 2325 Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 ||||||| || |||||| || | ||| ||||| || || || | |||||| || | Sbjct 2324 TCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACCAATA 2265 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || |||||||||| |||||| || ||||| ||| Sbjct 2264 GCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 >SEQ58105 Length=99015 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||| | || || || || | || ||||| || |||||||| | Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCT 17260 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| ||||| ||||| || || || || || || ||||| || ||||| | Sbjct 17259 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATG 17200 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGT--CATGTA-TCCACTTTTGAGCCCAATCGG 42263 | | || | |||||| | ||| | | | || | |||| | | | ||||| || | Sbjct 17199 CTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTG 17140 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||||||| |||||||||| |||||||| |||||||| Sbjct 17139 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Score = 93.3 bits (102), Expect = 6e-14 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 ||| || || |||| |||| ||| |||||||| || |||||||| || ||||| || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || ||||| | ||| ||||| |||| || || || || |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670575787030840