Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 201 1e-46 seq2773 141 9e-29 SEQ17521 132 5e-26 SEQ58356 116 4e-21 seq4618 107 2e-18 seq2744 98.7 1e-15 SEQ58105 96.9 4e-15 >SEQ21942 Length=42535 Score = 201 bits (222), Expect = 1e-46 Identities = 348/502 (69%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| ||| || || || || || || || || ||||||||||| || || || || ||| Sbjct 35103 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCG 35044 Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CG-TCTGCCGTACGC 19519 ||||||||||| |||| || | |||| || || | | ||| || ||| | | Sbjct 35043 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCT--CTTTTTA 34986 Query 19520 TCTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCA 19579 ||| || | | ||| ||||| || | | ||||||||||||||| || || || | Sbjct 34985 CCTTATCATCAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAA 34926 Query 19580 CTTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACG 19639 | || |||| ||| | || ||| | ||| ||||| ||||||||||||||||| | Sbjct 34925 CCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAG 34866 Query 19640 GTTCGTTCCATGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAA 19699 |||||||||| | | | ||| || || ||||| |||| || |||||||| ||||| | Sbjct 34865 GTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGA 34806 Query 19700 TGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCG 19759 | | ||||||||||| | || ||| || || |||||||| |||| |||||| || Sbjct 34805 TAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTT 34746 Query 19760 GGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACA 19819 || ||| | || || || ||||| || || || ||||| | || ||||| | Sbjct 34745 CGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAA 34686 Query 19820 ACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACAC 19879 | ||| | | ||||| |||| || ||||| || || || | || || || |||| Sbjct 34685 GAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACAC 34626 Query 19880 CCCATTCGACAAAGTATGCACC 19901 |||| || ||||| || || || Sbjct 34625 CCCACTCCACAAAATAAGCTCC 34604 >seq2773 Length=85211 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||||||| || || || || |||| |||||||| ||||| ||||||||||| | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | | ||||| |||||||| |||||| |||| || || || || || ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | || | || || | ||||| ||| Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| |||| |||||| || || ||||||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCATA 66621 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||||||| || || || || |||| |||||||| ||||| ||||||||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | | ||||| || ||||| || || |||| ||||| |||||||||||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | ||| | || |||| || || || Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||| || || ||||| ||||| Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| ||| | |||| ||||| |||||||| |||||||| || | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| | || || |||||||| || ||||| Sbjct 66560 AGGGTACGTCCA-TCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGG 66502 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||| |||| | ||| | || || | || ||||| Sbjct 66501 GATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTAC 66442 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||| || || | ||||| || || |||||||| Sbjct 66441 TTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || ||||||||| | ||| || ||||| || | || ||||||||||| |||||||| || Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | || | | ||||| |||||||| |||||| |||| || || || || || || Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 ||| |||||||| ||||| ||||| ||| | | || | || || | ||||| Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | ||| | ||||| || || | || || || || || ||||| Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 >SEQ17521 Length=26855 Score = 132 bits (146), Expect = 5e-26 Identities = 475/737 (64%), Gaps = 7/737 (1%) Strand=Plus/Minus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACG 156551 |||| |||||||||||||| || || || || ||||| | | ||| ||| | Sbjct 3655 GGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATG 3596 Query 156552 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 156611 ||||||| || || || ||| ||||| ||||| || | ||||| ||||| ||||| Sbjct 3595 GTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCA 3536 Query 156612 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGA-CCAGTCC 156670 |||| |||||||| | ||| | ||| ||| ||| | || || | | ||| ||| Sbjct 3535 GTAGCAGAGAATTACGAATTCCATGTTTAGCTAT-TTTTTCTTTAAGAGCAACCCAATCC 3477 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 || | ||| || | ||||||||| ||| ||||||| || |||| ||| | Sbjct 3476 CAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGA 3417 Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACT-AACAGATGCCAGTTCGTAACTGGCCTCGAG 156789 ||||| || | | |||||| ||| || || | ||| | || || || | Sbjct 3416 CTACCTTCATATGAACTATAA-ACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAA 3358 Query 156790 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 156849 || | | ||| | ||| ||| || |||| || || | | || || || | Sbjct 3357 AGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTC 3298 Query 156850 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGG 156909 || || ||||| || ||||| ||||| || |||||||| | ||||| || || || Sbjct 3297 ATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGG 3238 Query 156910 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 156969 | ||| |||||||| || ||||| || | || || || ||||| ||| ||||| Sbjct 3237 TCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAAT 3178 Query 156970 TTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG- 157028 |||||| | | | || | ||| || | || || ||||| | | Sbjct 3177 TTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGT 3118 Query 157029 --TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTC 157086 |||||| ||| | | | |||| | ||||| || |||| ||||||||| || ||| Sbjct 3117 TCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTC 3058 Query 157087 GTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCA 157146 || | |||| ||||||||| | ||| | ||| || ||||| || ||| Sbjct 3057 ATCTACTGATGTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAG 2998 Query 157147 ATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGT 157206 ||| | ||||| || || | ||| || | || |||||||||||| | || ||||| || Sbjct 2997 ATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGT 2938 Query 157207 TTCGGCTTGAATTTCTA 157223 ||| |||| ||||| Sbjct 2937 TTCAACTTGTGCTTCTA 2921 >SEQ58356 Length=38410 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||| || | ||| | |||||| || || || || ||||| ||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| || |||||||||||| |||||| |||||||||||| || || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||||| ||||| | ||| | || || | || || || Sbjct 35160 ATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACC 35219 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| |||||||| ||||| Sbjct 35220 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq4618 Length=10119 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | || || ||||| | ||||||||||||||| || ||||| || Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| || ||||| || ||| |||| || | ||||| || || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| || | | ||| | ||||| | || || ||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | ||| ||||||||||| || ||||| || | ||||| ||||| Sbjct 638 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 579 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || || || ||| |||| || | ||||| || || || || || |||||||| | Sbjct 578 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 519 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| || | | ||| | ||||| | || || ||||||| ||| | || ||| Sbjct 518 ATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTG 459 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || ||||| |||||||| Sbjct 458 CCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | || || ||||| | ||| ||||||||||| |||||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || || ||||||||| |||| || | ||||| || || || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| |||| | ||| | ||||| | |||||||| Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | ||| ||||| || || ||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >SEQ58105 Length=99015 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 50627 TCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGT 50686 ||||||| || || | ||| || | ||||| || || |||||| |||||||| | || Sbjct 17750 TCAAAGACGCTGTGGTCATAGAGCAGGAGTTCTTAACTGACGCTCTACCCGTGAGACTGC 17809 Query 50687 TGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGT 50746 | ||||||||| || |||||| || ||||||||||||||||| ||||||||| || Sbjct 17810 TAGGCATGAACTGTGAACTGATGTCAGATTACATTGAGTTTGTTGCTGACAGATTGCTGG 17869 Query 50747 TGCAGCTG 50754 | ||||| Sbjct 17870 TTGAGCTG 17877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506588767748880