Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08-
10] 67,159 sequences; 855,081,797 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
SEQ21942 201 1e-46
seq2773 141 9e-29
SEQ17521 132 5e-26
SEQ58356 116 4e-21
seq4618 107 2e-18
seq2744 98.7 1e-15
SEQ58105 96.9 4e-15
>SEQ21942
Length=42535
Score = 201 bits (222), Expect = 1e-46
Identities = 348/502 (69%), Gaps = 4/502 (1%)
Strand=Plus/Minus
Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461
|||| ||| || || || || || || || || ||||||||||| || || || || |||
Sbjct 35103 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCG 35044
Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CG-TCTGCCGTACGC 19519
||||||||||| |||| || | |||| || || | | ||| || ||| | |
Sbjct 35043 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCT--CTTTTTA 34986
Query 19520 TCTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCA 19579
||| || | | ||| ||||| || | | ||||||||||||||| || || || |
Sbjct 34985 CCTTATCATCAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAA 34926
Query 19580 CTTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACG 19639
| || |||| ||| | || ||| | ||| ||||| ||||||||||||||||| |
Sbjct 34925 CCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAG 34866
Query 19640 GTTCGTTCCATGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAA 19699
|||||||||| | | | ||| || || ||||| |||| || |||||||| ||||| |
Sbjct 34865 GTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGA 34806
Query 19700 TGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCG 19759
| | ||||||||||| | || ||| || || |||||||| |||| |||||| ||
Sbjct 34805 TAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTT 34746
Query 19760 GGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACA 19819
|| ||| | || || || ||||| || || || ||||| | || ||||| |
Sbjct 34745 CGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAA 34686
Query 19820 ACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACAC 19879
| ||| | | ||||| |||| || ||||| || || || | || || || ||||
Sbjct 34685 GAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACAC 34626
Query 19880 CCCATTCGACAAAGTATGCACC 19901
|||| || ||||| || || ||
Sbjct 34625 CCCACTCCACAAAATAAGCTCC 34604
>seq2773
Length=85211
Score = 141 bits (156), Expect = 9e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||||||| || || || || |||| |||||||| ||||| ||||||||||| |
Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | | ||||| |||||||| |||||| |||| || || || || || |||||
Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| ||||| ||| | | || | || || | ||||| |||
Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | |||||||| |||| |||||| || || |||||||||
Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCATA 66621
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||||||| || || || || |||| |||||||| ||||| ||||||||||| |
Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | | ||||| || ||||| || || |||| ||||| ||||||||||||||
Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| |||||| ||||| | ||| | || |||| || || ||
Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || || | ||| || || ||||| |||||
Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | ||||| ||| | |||| ||||| |||||||| |||||||| || |
Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| ||||| || |||||| | || || |||||||| || |||||
Sbjct 66560 AGGGTACGTCCA-TCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGG 66502
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||||||||| ||||| |||| | ||| | || || | || |||||
Sbjct 66501 GATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTAC 66442
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | || | |||||| || || | ||||| || || ||||||||
Sbjct 66441 TTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013
|| ||||||||| | ||| || ||||| || | || ||||||||||| |||||||| ||
Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477
Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073
| || | | ||||| |||||||| |||||| |||| || || || || || ||
Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417
Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133
||| |||||||| ||||| ||||| ||| | | || | || || | |||||
Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357
Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||| | ||| | ||||| || || | || || || || || |||||
Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306
>SEQ17521
Length=26855
Score = 132 bits (146), Expect = 5e-26
Identities = 475/737 (64%), Gaps = 7/737 (1%)
Strand=Plus/Minus
Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACG 156551
|||| |||||||||||||| || || || || ||||| | | ||| ||| |
Sbjct 3655 GGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATG 3596
Query 156552 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 156611
||||||| || || || ||| ||||| ||||| || | ||||| ||||| |||||
Sbjct 3595 GTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCA 3536
Query 156612 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGA-CCAGTCC 156670
|||| |||||||| | ||| | ||| ||| ||| | || || | | ||| |||
Sbjct 3535 GTAGCAGAGAATTACGAATTCCATGTTTAGCTAT-TTTTTCTTTAAGAGCAACCCAATCC 3477
Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730
|| | ||| || | ||||||||| ||| ||||||| || |||| ||| |
Sbjct 3476 CAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGA 3417
Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACT-AACAGATGCCAGTTCGTAACTGGCCTCGAG 156789
||||| || | | |||||| ||| || || | ||| | || || || |
Sbjct 3416 CTACCTTCATATGAACTATAA-ACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAA 3358
Query 156790 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 156849
|| | | ||| | ||| ||| || |||| || || | | || || || |
Sbjct 3357 AGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTC 3298
Query 156850 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGG 156909
|| || ||||| || ||||| ||||| || |||||||| | ||||| || || ||
Sbjct 3297 ATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGG 3238
Query 156910 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 156969
| ||| |||||||| || ||||| || | || || || ||||| ||| |||||
Sbjct 3237 TCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAAT 3178
Query 156970 TTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG- 157028
|||||| | | | || | ||| || | || || ||||| | |
Sbjct 3177 TTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGT 3118
Query 157029 --TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTC 157086
|||||| ||| | | | |||| | ||||| || |||| ||||||||| || |||
Sbjct 3117 TCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTC 3058
Query 157087 GTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCA 157146
|| | |||| ||||||||| | ||| | ||| || ||||| || |||
Sbjct 3057 ATCTACTGATGTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAG 2998
Query 157147 ATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGT 157206
||| | ||||| || || | ||| || | || |||||||||||| | || ||||| ||
Sbjct 2997 ATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGT 2938
Query 157207 TTCGGCTTGAATTTCTA 157223
||| |||| |||||
Sbjct 2937 TTCAACTTGTGCTTCTA 2921
>SEQ58356
Length=38410
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| ||| | ||| || | ||| | |||||| || || || || ||||| |||
Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| ||||| || |||||||||||| |||||| |||||||||||| || ||
Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || ||||| || ||||||| ||||| | ||| | || || | || || ||
Sbjct 35160 ATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACC 35219
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || || | ||||| |||||||| |||||
Sbjct 35220 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266
>seq4618
Length=10119
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | || || ||||| | ||||||||||||||| || ||||| ||
Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| ||||| || ||||| || ||| |||| || | ||||| || || ||
Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| |||||| || | | ||| | ||||| | || || |||
Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | || ||||| ||||| || || ||||| ||||||||
Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035
|| ||||| | ||| ||||||||||| || ||||| || | ||||| |||||
Sbjct 638 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 579
Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095
|| || || || ||| |||| || | ||||| || || || || || |||||||| |
Sbjct 578 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 519
Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155
||||| || | | ||| | ||||| | || || ||||||| ||| | || |||
Sbjct 518 ATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTG 459
Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| ||||| || || ||||| ||||||||
Sbjct 458 CCAGTCAAGGTCTTGACGAAAATTTGCAT 430
>seq2744
Length=156805
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | || || ||||| | ||| ||||||||||| |||||||| ||
Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | ||||| || || ||||||||| |||| || | ||||| || || ||
Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| |||||| |||| | ||| | ||||| | ||||||||
Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || ||||| || | ||| ||||| || || |||||
Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570
>SEQ58105
Length=99015
Score = 96.9 bits (106), Expect = 4e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 50627 TCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGT 50686
||||||| || || | ||| || | ||||| || || |||||| |||||||| | ||
Sbjct 17750 TCAAAGACGCTGTGGTCATAGAGCAGGAGTTCTTAACTGACGCTCTACCCGTGAGACTGC 17809
Query 50687 TGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGT 50746
| ||||||||| || |||||| || ||||||||||||||||| ||||||||| ||
Sbjct 17810 TAGGCATGAACTGTGAACTGATGTCAGATTACATTGAGTTTGTTGCTGACAGATTGCTGG 17869
Query 50747 TGCAGCTG 50754
| |||||
Sbjct 17870 TTGAGCTG 17877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506588767748880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |