Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value SEQ11636 120 4e-22 seq4084 102 1e-16 SEQ58105 98.7 1e-15 SEQ17521 96.9 5e-15 >SEQ11636 Length=47261 Score = 120 bits (132), Expect = 4e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 || ||||||| ||||| || || |||| || | |||||||| || ||||| | || Sbjct 5497 ACAAATCCAAATGATAGAAGAATGATAATTTGTGCGTGGAATCCAGCTGATTTAAAAAAA 5556 Query 70250 ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACG--ATGGCAAATTGT 70307 ||||| ||||| || ||||||||| | | ||||| || ||| ||||| | ||| Sbjct 5557 ATGGCTCTACCTCCATGTCACTGTCTCGTGCAGTTCTAT--GTAGCTAATGGCGAGCTGT 5614 Query 70308 CATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367 | || ||||| ||||| ||||| || ||||| | || |||||||| ||||| || | Sbjct 5615 CGTGTAACATGTACCAGAGAAGTGCTGATTTGGGCTTAGGAGTACCCTTCAACATAGCCA 5674 Query 70368 GCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 |||| || | || || ||||||||||| ||||| || Sbjct 5675 GCTACTCGCTTTTAACCCACATGATTGCACACATAAC 5711 >seq4084 Length=183314 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || ||||| |||| ||||| || | ||||| |||| | ||||| || || Sbjct 59844 TGGCCTGTGGAGTACGTAATATACACAGCCACATTTCCTTGTGCCTTGACCGGTGCTGAC 59903 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || | ||||| ||||| | || || ||||| || || || || | || | ||||| Sbjct 59904 TTAGCGATATTTGCAGCTTCATTCGCGTACATCGCGGACGTTTCTTCGTTGAAAAATCGA 59963 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGC 50313 || || ||||||||||| ||||||| || ||| | ||||| ||||| || ||||| || Sbjct 59964 ACCCTCCGAGTGGGCATTTTGGATGTTGTATACTTAAGCACTATGCCTACGGGTGTTGC 60022 >SEQ58105 Length=99015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || ||||| || || |||||||| || || || || || |||||||| | ||||||||| Sbjct 17196 GTAGCATTTGCAGCGGTAGAGGGTATTTTTTTCTCAGGCAGTTTTGCTTCTATCTTTTGG 17255 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 | |||||||| ||||||||||| || |||| |||||| ||| |||| || |||| Sbjct 17256 TTAAAGAAGCGTGGACTCATGCCTGGTTTGACTTTCAGTAATGAGCTTATTTCAAGAGAT 17315 Query 125550 GAGG 125553 |||| Sbjct 17316 GAGG 17319 >SEQ17521 Length=26855 Score = 96.9 bits (106), Expect = 5e-15 Identities = 206/302 (68%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAAT-GCAATGTCACGATACGTTACACAGGGCG 96882 ||| || || |||||| | ||| | || || ||| | || |||| || || || | Sbjct 2550 TGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCA-GATATGTAGATCAAGGTG 2608 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 | || || || ||||| || | || || || || ||||| ||||| | || || |||| Sbjct 2609 GTAACAAGCGTCCAGGGGCATTTGCTGTATATTTAGAACCATGGCATTCAGATGTGTTTG 2668 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | ||| | || || || || |||| ||||| | ||||| ||||| ||||||| Sbjct 2669 AGTTTTTAGATCTGAAAAAGAATACTGGTAAAGAAGAAGTTCGAGCTAGGGAATTGTTTT 2728 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCC 97062 |||| | ||| | ||||||||||| ||||| | || | | || | ||||| Sbjct 2729 ATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTGAAAAAAATGAAAATTGGAGTT 2788 Query 97063 TAATGTGCCCC---GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 | ||||| ||| |||| || || ||| || | ||||| ||||| ||||||||||| | Sbjct 2789 TGATGTGTCCCCATGACT-GT--CCTGGTTTGGCAGATTGTTGGGGAGAAGAGTTTGAAG 2845 Query 97120 CC 97121 || Sbjct 2846 CC 2847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740437090064840