Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5513 149 5e-31 SEQ58356 129 5e-25 seq2773 107 2e-18 seq2130 95.1 1e-14 seq4618 89.7 4e-13 >seq5513 Length=124375 Score = 149 bits (164), Expect = 5e-31 Identities = 356/537 (66%), Gaps = 44/537 (8%) Strand=Plus/Plus Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914 ||||||| ||| | | |||||||| ||||| || || || ||||||||| | ||||| Sbjct 10598 GCACACGCTTCCGATATAACCTTTTGAACATACTCTCGTCCTTTGACAAGTTGGACGTAG 10657 Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGC---TCGTCATCTTGCTCCCAG 24971 || || || |||||||| | || ||||| | ||| || ||||||| || |||| Sbjct 10658 GCACATCGATCGAACCAACGTGCATGTTGCTCCCAGGGAATATCGTCATTTT---CCCAA 10714 Query 24972 TTGTCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAG 25031 | | |||||| ||||| ||| | || ||||| |||||| | | || ||||| ||| Sbjct 10715 TCCTTCAAACCACCGTCACAGAAGAAGCATTTCGTTTTGTCTCCTTGACCAGTGTAGAAG 10774 Query 25032 AAGCCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAAT 25091 || |||||||| || || | || ||| ||| || || ||| ||||| || |||| Sbjct 10775 AAACCAGCTTCGGCTAGCTCCTCAGGCTTTTGGCGCATACTGCGAGGCCAATCGACAAAT 10834 Query 25092 GTGCGCAAACGCGCAGCTTCTATCGCATATTTGGGGTGCGCGGGTGGCGG-------AGA 25144 || || | ||| |||||||| |||||| |||||| |||||| | || | | Sbjct 10835 GTACGGAGACGGGCAGCTTCGGATGCATATCGGGGGTGAGCGGGTCGTGGTATATGGATA 10894 Query 25145 GG-GCAG-TTGATTTGTTG-----CTT----CACGTTCTTG-CGGCGCGTGCAAACNNNN 25192 || |||| |||| |||||| ||| ||| ||| | |||| ||| || | Sbjct 10895 GGTGCAGCTTGAGTTGTTGGCGCTCTTGTTCCACATTCGTCACGGC-CGT-CAGATGTAG 10952 Query 25193 NNNNNNNNNNNNNNNNNNNNNGGTTGCGCCGCT------CCTACGCAAAAACGGGCATTG 25246 |||| | ||| | || | ||||| ||||| Sbjct 10953 GCGATTCCATCGGCACA------TTGC-CAGCTTGATGTCTTAGG----AACGGACATTG 11001 Query 25247 CGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCAGCGCATAATCTC 25306 || ||||| ||||||| || ||| || |||||||| || |||| | ||| || || Sbjct 11002 AGGTGCCCACCTTTGATGGTCTACAGCAGGATCGTCGCCTTCCACCCATCTCATGATTTC 11061 Query 25307 CACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTAGAACCCATT 25363 |||||||| || |||||||||||||| ||||| || || | |||||||| || || Sbjct 11062 GACTTTGCAGAAAGCGCAGCGCACTTCATCGCCCCGACCTAGATAGTAGAATCCGTT 11118 >SEQ58356 Length=38410 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866 ||| ||| ||||||| ||||| ||||| | ||||| ||||||||||| |||||||||| Sbjct 35032 ATTTTTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGT 35091 Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926 | || | | ||| | | || |||||||||||||| ||| | || | | ||||||| Sbjct 35092 AGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGAT 35151 Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986 || || | |||||||| || |||||| |||||| | | | ||||||| | Sbjct 35152 CCGGTGGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGG 35211 Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| |||| ||| |||||||| || || | ||||| || || || |||||| Sbjct 35212 CCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq2773 Length=85211 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| || | ||| |||| ||| | |||||| ||||||||||| |||||||| | Sbjct 66394 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66335 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | || || |||||||| || || | ||||| | ||||||||| | Sbjct 66334 ACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAG 66275 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| |||||| | | | ||||| ||||| Sbjct 66274 GGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| |||||||| || || | || || ||||| || |||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| || | ||| |||| ||| | |||||| ||||||||||| |||||||| | Sbjct 66850 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66791 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | || || || ||||| || ||| | || |||| ||| || || | Sbjct 66790 ACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 66731 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| ||||| ||| || | | | ||||| ||| || Sbjct 66730 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66671 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| || || ||||| | ||||| |||||||||||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 >seq2130 Length=187805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||||||||| |||||| | ||| | ||| ||| | | || | || ||||||||| Sbjct 86219 GGCGGCGTGGGGCTGAACCTGTGCGGGGCCAACCACCTGCTGGTGCTCGACCCCCACTGG 86160 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| |||| | |||||||| ||||||||| ||||| ||||||| Sbjct 86159 AACCCGCAGCTCGAGCAACAGGCGCAGGACCGCATCTACCGCGTGGGCCA 86110 >seq4618 Length=10119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || | |||| || | ||||| || ||||| |||||||| |||| Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| |||||| | || || |||||||| || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| |||||| || || | | | || || ||||| | Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || || || ||||| ||||||||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414233472033646