Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 123 2e-23 seq2773 96.9 2e-15 >SEQ58356 Length=38410 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33139 TTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATC 33198 || ||| |||||||||| |||||| | ||||||||| ||||| || || |||||||| || Sbjct 35036 TTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTC 35095 Query 33199 AGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || || || | || |||| || || ||| ||| || ||||||||||| |||| Sbjct 35096 GGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGG 35155 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || ||||| || ||| |||||| ||| ||| || ||| || | Sbjct 35156 TGGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTC 35215 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 35216 CACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2773 Length=85211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 14/204 (7%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTT 33228 |||||||||||||| |||||||| ||||||| | ||| | || |||| |||||| Sbjct 67274 GTCGACTCTTTTTGAATATTGTAGTCAGACA----GGGTTCGCCCATCTTCCAGTTGCTT 67219 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGC 33285 |||| ||| || | || || ||||| | || |||||||| || || | | | || Sbjct 67218 TCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGC 67159 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || | | ||| ||||| |||| ||| |||| ||| || || || ||||| Sbjct 67158 ---TTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGT 67102 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||||||||| Sbjct 67101 TAGTGTTTTCACAAAAATTTGCAT 67078 Score = 91.5 bits (100), Expect = 9e-14 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| || ||||| ||||||| | || || |||| |||||| ||| Sbjct 66590 GTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCA 66531 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || | ||||||||||||| || ||||||||||| || | | ||||| Sbjct 66530 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCC--- 66474 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| ||| || || || || | || || | || ||||| || || || ||| Sbjct 66473 TTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGA 66414 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| Sbjct 66413 GTTTTAACAAAGATTTGCAT 66394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318516680434782