Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 259 4e-64 seq2773 111 1e-19 seq2744 96.9 3e-15 seq5513 91.5 1e-13 >SEQ21942 Length=42535 Score = 259 bits (286), Expect = 4e-64 Identities = 589/877 (67%), Gaps = 13/877 (1%) Strand=Plus/Minus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || || |||||||| || |||||||| || || || || ||||| || |||| || Sbjct 35475 ACTCCAGTCCAACCACGACCGTACATCGCTACACCAACTATAATCTTCTTAGGGTTGACT 35416 Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221 || ||| ||| |||||| | | || || |||| || ||||| ||||| Sbjct 35415 CCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCTTTTGGATTCCAT 35356 Query 101222 CTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAA 101281 || || || | | ||||||| || ||| | ||||||||||| ||||| || Sbjct 35355 GCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTGTCATTTGACCACGCTCCTTTAAAG 35296 Query 101282 TCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACA 101341 ||||| ||||| | ||| || | ||| | | | || || ||| | ||||| Sbjct 35295 TCGTAACTCATTAAAAAGATATGATCCATATATTGCTGAGCTTTCCTGTAATCAACTACT 35236 Query 101342 GCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTTGC 101401 || || || ||| | |||||| || ||| | ||| ||| | || || || | | Sbjct 35235 TGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTCTTACCGGTCTCC 35176 Query 101402 AGTTGCAA-CTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAGC 101460 || | | ||||| ||||||| | || || ||||||| | | || || | | | Sbjct 35175 -GTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATCA----GCTGGACATA--AAC 35123 Query 101461 GTCGCGTTC-TTTGTTGC--CGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCA 101517 || | || |||| | | |||| | || || || ||||| ||||| || |||||||| Sbjct 35122 TTCACCGTCATTTGGTCCACCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCA 35063 Query 101518 ATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCAC 101577 ||| ||||| || ||||| || ||||||||| || | || ||||| || || |||| Sbjct 35062 ATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCAC 35003 Query 101578 AAACACACGCCGTTTTATCGCGTCGTGCATATAA-TAGAACGGGTCGGACAATGTCCAGC 101636 ||| | | ||||| | || | || | || ||||| || || | ||||||||||| Sbjct 35002 AAAACGATCTCTTTTTACCTTATCAT-CAAAGAAGTAGAATGGATCTGCCAATGTCCAGC 34944 Query 101637 CGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGAC 101696 | ||||| || || | || || || | || | || ||| | ||| || || | Sbjct 34943 CCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTC 34884 Query 101697 CAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTG 101756 |||||||||||||||| || |||||||| | || | ||| ||||| |||||||||| | Sbjct 34883 CAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAG 34824 Query 101757 CGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCA 101816 | |||||||| |||||||||| |||||| || || || || |||||| ||||||| Sbjct 34823 CTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAGATCGTTGCA 34764 Query 101817 ACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAA 101876 | |||| ||||| || || ||| | |||||||| || || |||||||| | Sbjct 34763 AAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGA 34704 Query 101877 TGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAA 101936 |||| || || ||||| | | ||||| || || || | || || || || || || | Sbjct 34703 TGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGA 34644 Query 101937 AGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 | || | | || || ||||| || |||||||| || Sbjct 34643 ATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGC 34607 >seq2773 Length=85211 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||||||| | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 66850 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66791 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||| | |||||| || ||| | || || | |||||| || | Sbjct 66790 ACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 66731 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| ||||| ||| || | ||| | ||| |||||| Sbjct 66730 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66671 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || ||||| |||| ||||| |||||||||||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||||||| | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 66394 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66335 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||| | ||||| || || | ||||| | ||| |||||| | Sbjct 66334 ACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAG 66275 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||| || | ||| | ||| || || Sbjct 66274 GGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||| |||||||| || || | || || ||||| || ||||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTT 66162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 19954 ATAAAATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGT 20013 |||||||| || |||| | | ||| |||||||| | | || || || || | || Sbjct 67559 ATAAAATTCAAGGTTATTATTTAATTG-CCTCCTCGGAGACGTAATACTAAGTGCAAAGT 67501 Query 20014 AGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AATCTTCCAATTGTTTGCCC 20071 ||||||||||| |||||||| | | |||| || | |||||||| |||||| || Sbjct 67500 GGATTCTTTTTGAATGTTGTAGT--CAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCA 67443 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| | || || | |||||| || || | |||||| ||||| ||||| ||| Sbjct 67442 GCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTG 67383 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | ||| |||||| ||||| |||||||| || || || | || Sbjct 67382 ACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTC 67323 Query 20192 TTGACAAAAATTTGCATT 20209 |||||||| || |||||| Sbjct 67322 TTGACAAAGATCTGCATT 67305 >seq2744 Length=156805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || |||| |||||||| ||||| ||||||||||| |||||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAG-- 156739 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACG 20098 | ||| | || |||||| | || || || ||| | ||||||||||| || || | || Sbjct 156738 AGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCG 156679 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | || |||||||| |||||| || || | ||| || || |||||| Sbjct 156678 GG-ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 156620 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | |||||| |||||||| || | || || |||||||| ||||| || Sbjct 156619 ACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq5513 Length=124375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 23892 AACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCCTCCAACCAG 23951 ||||| || || |||||||| | || ||| ||||| || || || ||||| |||| ||| Sbjct 10991 AACGGACATTGAGGTGCCCACCTTTGATGGTCTACAGCAGGATCGTCGCCTTCCACCCAT 11050 Query 23952 CGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTCCGAGCGCCTCAAATAGTAA 24011 | ||| ||||| |||||||| || ||||||||||| || || || | | |||||| Sbjct 11051 CTCATGATTTCGACTTTGCAGAAAGCGCAGCGCACTTCATCGCCCCGACCTAGATAGTAG 11110 Query 24012 AACCCGTT 24019 || ||||| Sbjct 11111 AATCCGTT 11118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419243767745679