Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2744 187 6e-42 seq2773 185 2e-41 SEQ58356 174 4e-38 seq4618 131 4e-25 SEQ58105 109 1e-18 seq1406 87.8 4e-12 >seq2744 Length=156805 Score = 187 bits (206), Expect = 6e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | ||| | ||| |||||||| || || || |||||| Sbjct 156799 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCA 156740 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| || || || Sbjct 156739 GAGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 156680 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || ||||| || || ||||||||||| | || || ||||||| Sbjct 156679 GGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 156620 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 |||||||| |||||||| || ||||| ||||| |||||||| |||||||| || || Sbjct 156619 ACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTTCTG 156564 >seq2773 Length=85211 Score = 185 bits (204), Expect = 2e-41 Identities = 185/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 104324 TTATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381 ||||||| | || |||| || | | ||||| || || || |||||||| ||||| | Sbjct 67543 TTATTTAATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGT 67484 Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 | ||||||||||| |||| || ||||| ||||||||||||||||| || || | ||||| Sbjct 67483 TGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTT 67424 Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 | || ||||| || ||||| || ||||| || || ||||| ||||| || | ||||| Sbjct 67423 GGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTG 67364 Query 104502 TAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||| || | ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 67363 AAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTA-GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||||| |||| || || ||| ||| | || | |||||||| || ||||| || || || Sbjct 66851 ATTCCACCTCGTAAGCGTAA-TACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 66793 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| || || | || ||||||||||||||||||||||| || || | |||||| || || Sbjct 66792 AGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 66733 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || ||||| || ||||| || || ||||| ||||| || | ||||| |||||| Sbjct 66732 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTC 66673 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||||||||| || || |||||||| ||||| || ||||| Sbjct 66672 AACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||||| || || | || || ||||| |||||||| |||||| Sbjct 67307 ATTCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCA 67248 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| ||||| ||||||||||| || || | |||||| || ||| Sbjct 67247 GACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGA 67188 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| || || ||||| ||||| || | || || |||||| Sbjct 67187 GGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCA 67128 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| || || |||||||| ||||| || ||||| Sbjct 67127 ACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 158 bits (174), Expect = 3e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTA-GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||||| |||| || || ||| ||| | || | |||||||| || ||||| || || || Sbjct 66395 ATTCCACCTCGTAAGCGTAA-TACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 66337 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| || || | || ||||| || ||||| || || || || || | ||| ||||| || Sbjct 66336 AGACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGG 66277 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || |||||||| |||||||| || |||||||||||||| | ||||| || || Sbjct 66276 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 66217 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | || || || || ||||| ||||| || ||||||||||||||||| Sbjct 66216 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || || ||||| ||||| || |||||| Sbjct 67079 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 67020 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| ||||| ||||||||||| || || | |||||| || ||| Sbjct 67019 GAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGA 66960 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | ||||| |||||| Sbjct 66959 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCA 66900 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||| ||||| |||||||| || || ||||| || |||||| Sbjct 66899 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | ||||| ||||| ||||| || |||||| Sbjct 66623 ATACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 66564 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| ||||| || ||||||||||| |||| || || || ||| Sbjct 66563 GACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 66504 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || ||||| ||||| | ||||| || ||| Sbjct 66503 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 66444 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || |||| ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 66443 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 >SEQ58356 Length=38410 Score = 174 bits (192), Expect = 4e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 ||| | || ||||||| ||| | || ||||| |||||||| || ||||||||||| ||| Sbjct 35034 TTTTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAG 35093 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || |||| || | || ||||| || ||||| |||||||| || | | || ||||| Sbjct 35094 TCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCC 35153 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || || || |||||||| ||||| ||||||||||||||||| | |||||| | Sbjct 35154 GGTGGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCC 35213 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || ||||| ||||| || |||||||||||| Sbjct 35214 TCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq4618 Length=10119 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | ||| | |||||||||||| || ||||| ||||| Sbjct 431 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCC 372 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || |||||||| || || || Sbjct 371 GAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGT 312 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || ||||| || || || |||||||| | ||| || || || Sbjct 311 GGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCA 252 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | || || || || || ||||| Sbjct 251 ACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | ||| | ||| ||||||||||| ||||| ||||| Sbjct 203 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCC 144 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || || ||| Sbjct 143 GAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGA 84 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || || || || || |||||||| | ||| || || || Sbjct 83 GGGATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCA 24 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || || || || || Sbjct 23 ACTTCAAGAGTGATGGTTTTGCC 1 >SEQ58105 Length=99015 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| || |||||||| | |||||| || || || ||||||||||| ||| || | Sbjct 16297 TTCTAGCATTTTTTGCTGCATCTGATGGAATTGTCAATGAAAATCTAGTGGAGCGATTTT 16356 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 |||||||| || || |||| ||||||| || || || ||||| ||||| || |||| Sbjct 16357 CACAAGAGGTTCAAGTTACTGAGGCCAGATTCTTCTATGGGTTCCAAATAGCCATGGAAA 16416 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 || |||| || || |||||| |||||||| || || || || |||| ||| |||| Sbjct 16417 ATGTTCACTCTGAAATGTACTCCCTATTAATTGACACATACATTCGTGATTCCAAAGAAA 16476 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268689 ATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACA 268748 ||||||| ||||||||| |||||||| || ||| || ||||| ||| ||||||| Sbjct 16060 ATAACCCTCGTAGATTTGTTATATTTCCTATCCAGTATCCAGATATTTGGGAAATGTACA 16119 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || | |||| ||||| ||||||||||| |||||||| ||| Sbjct 16120 AAAAAGCCGAAGCTTCCTTTTGGACTGTTGAAGAAGTGGAT 16160 >seq1406 Length=443732 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 237981 TTTAT-ACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAGA 238039 ||||| ||| || || ||||| |||||||| || ||||||| || || | ||||| || Sbjct 37905 TTTATTACAGGTAGATGCTCATAATATTGTCCCATGTTGGGTTGCCTCCGAAAAACAGGA 37964 Query 238040 ATACGGTGCTAGAAC-ATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAG 238098 |||| ||||||||| |||| | || ||||||||| || || || || ||||||| Sbjct 37965 ATACTCTGCTAGAACCATTA-GAAACAAAATAAATTCTAAATTGGACGAATTCCTTACAG 38023 Query 238099 AATTTCCTGTAATAACTAAACATCCTTAC 238127 ||||||| | | | |||||||| ||| Sbjct 38024 AATTTCCCCCAGTCATCAAACATCCGTAC 38052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150407650821572