Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 241 1e-58 seq2773 107 2e-18 >SEQ21942 Length=42535 Score = 241 bits (266), Expect = 1e-58 Identities = 769/1170 (66%), Gaps = 37/1170 (3%) Strand=Plus/Plus Query 30231 TTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCC 30290 ||| ||||| ||||||||||||||| ||| ||| |||| ||| || ||| | || Sbjct 34609 TTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCC 34668 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| |||||| | || || ||| | || |||| || || || || || ||||| Sbjct 34669 GAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGA 34728 Query 30351 TAGCTT-AAAGCAAGTGCCGGGTTCGTTTG-AGGCTTTACAAAAATCTTGC-GCGGGTCG 30407 || || |||| || | || |||| | ||||| ||| ||||||| ||||| || Sbjct 34729 CAGTTTGAAAGAAATCGAAGGAA--GTTTCCAAGCTTTGCAACGATCTTGCAGCGGG-CG 34785 Query 30408 AGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGG 30467 |||||| || ||||| | || ||||| ||||| ||| | ||||||||||| || || Sbjct 34786 AGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGG 34845 Query 30468 AGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAG 30527 || | | ||| |||| || || ||||| || ||||| ||||||||| | |||||| Sbjct 34846 TTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTC-TTTAAAAC 34904 Query 30528 ACAC-AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGC-GACCCT 30585 | | | || || || | | || | || || || || || |||||| || || || || Sbjct 34905 AAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACA-TTGGCAGATCCA 34963 Query 30586 TTCT-TTAAATTGA-GTTCTGCCGAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGT 30643 |||| | |||| | | | |||| | |||||| || | || | ||| | Sbjct 34964 TTCTACTTCTTTGATGATAAGGTAAAAAGAG-ATCGTTTT-GTGGCATCAGTGAAAGACT 35021 Query 30644 ATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTA 30703 | | || |||||||| || ||||| | ||||| || |||||||| || || || | Sbjct 35022 TCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAA 35081 Query 30704 AAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTAT 30763 ||||||||||||| | | || | || ||| || || | | ||||| ||| | Sbjct 35082 AAGGTGCTAATCCTAACCTCGGTGGACC---AAATGACGGTGAAGTTTATGTCCAGCTGA 35138 Query 30764 TGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGC 30823 |||||||| | | |||||||| ||||| || || | || || || || ||||| | | Sbjct 35139 TGAAAGAGTTACGTGAAATGCTGAACGAGCTATCCACGGAGACCGGTAAGAAATATGAAC 35198 Query 30824 TCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGCGC 30883 | || || || ||||| || || | ||||| ||| ||||| |||| || || | Sbjct 35199 TGACATCCGCTATTAGTGCTGGTTGGGATAAGATCCAAGTAGTTGATTACAGGAAAGCTC 35258 Query 30884 AAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAA-C 30942 | | ||| | ||||| || ||| | |||| ||||| |||||||| || ||||| || Sbjct 35259 AGCAATATATGGATCATATCTTTTTAATGAGTTACGACTTTAAAGGAGCGTGGTCAAATG 35318 Query 30943 ACGGACTTGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATAT 31002 || ||| ||| |||| || | | ||| |||| | ||||| | |||||| || Sbjct 35319 ACACTCTT-GGACATCAAACACCGTTATATGCACCAGCATGGAATCCAAAAGAAACCTAC 35377 Query 31003 ACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTG 31062 || | || | | || | | ||| ||| ||||| |||||| || | Sbjct 35378 ACAACTGACTTTGGAGTTAAAAATCTCTTAGCCCAAGGAGTCAACCCTAAGAAGATTATA 35437 Query 31063 CTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAAT 31122 | | ||| || |||||||| | || ||||| || || || || | | | || ||| Sbjct 35438 GTTGGTGTAGCGATGTACGGTCGTGGTTGGACTGGAGTCCAAAACTACACAGATAATAAT 35497 Query 31123 CCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGAT 31182 || || || || ||||| || || |||||| || ||| | ||| || || || Sbjct 35498 CCTTTCACTGGAGTAGCCACAGGTCCTTGTAAAGGGACGTGGCAGGATGGTGTGGTCGAC 35557 Query 31183 TACAAAG--ATTTGATACAAAGGTACACC--------GACACTT--ATTATGACTCTGTA 31230 |||| || ||| | | || | || | | | || ||||||| ||| Sbjct 35558 TACAGAGAAATTGCAAATGAAATTGCAGCAGGGAAATGGGAGTTCCATTATGATAATGTG 35617 Query 31231 GCGCAAGCGGCATATGCGTTC---GCAGAGAATGTTGGTGATCTACTTACTTACGATAAC 31287 || |||||| |||||| ||| | | | || |||||| |||| ||||| || Sbjct 35618 GCACAAGCGCCATATGTCTTCCGTCCTGCCA---CAGGGGATCTAATTACATACGACAAT 35674 Query 31288 CCAACGAGTGTGCAAGCTAAGGGAAAGTTTGTAATAGACAACAATTTGGGTGGTTTGTTT 31347 |||| || || || ||||||| ||| | | | || || | || ||||||||| Sbjct 35675 CCAAGATCCGTTATAGAGAAAGGAAAGTATGTTAGAAATAATAAGCTTGGAGGTTTGTTT 35734 Query 31348 GCGTGGGAACTGGACGCCGACAATGGCGAC 31377 ||||||||| | || || || | ||| ||| Sbjct 35735 GCGTGGGAAATAGATGCAGATACTGGGGAC 35764 >seq2773 Length=85211 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || || | ||| || || ||||| || |||||||||||||||||||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | ||| | || || ||||| || || || | || | |||||||||||| || Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||| |||||| |||||| || | | | || ||||| | | ||| | Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||||||||||| || ||||| || |||||||| |||||||| Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420906405761159