Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5637 136 2e-27 seq4229 127 1e-24 SEQ15725 125 4e-24 SEQ65207 123 1e-23 seq558 123 1e-23 seq2579 122 5e-23 seq1722 120 2e-22 SEQ10472 118 6e-22 seq5683 114 7e-21 >seq5637 Length=118306 Score = 136 bits (150), Expect = 2e-27 Identities = 89/99 (90%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 15663 TAAAAAATGAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 15604 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGT 11541 |||||| ||||||||||||||||||||| ||| ||||| Sbjct 15603 CGCTCTAACCAACTGAGCTAATGGGCCGATGACAATTGT 15565 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 20746 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20687 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 20686 TGAGCTAATGGGCC 20673 >seq4229 Length=43677 Score = 127 bits (140), Expect = 1e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 28165 AATGAAAAATGAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 28106 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 28105 GACGCTCTAACCAACTGAGCTAATGGGCC 28077 >SEQ15725 Length=51369 Score = 125 bits (138), Expect = 4e-24 Identities = 90/103 (87%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| || ||||| |||| |||| |||||||||| |||||||||| |||||||| Sbjct 43763 AAATAACAAAATAATATAAAAACAAACATGGCCCATGAGGGGATCGAACCCGCGACCTTC 43822 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 43823 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 43865 >SEQ65207 Length=2365 Score = 123 bits (136), Expect = 1e-23 Identities = 87/99 (88%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 726 TAAAAAAAAAACAT-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 668 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 ||||||||| ||||||||||||||||||||| ||| || Sbjct 667 CGACGCTCTAACCAACTGAGCTAATGGGCCGATGACAAT 629 >seq558 Length=2609681 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 300251 AAAAAAACCATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 300192 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 300191 GCTCTAACCAACTGAGCTAATGGGCCG 300165 >seq2579 Length=370220 Score = 122 bits (134), Expect = 5e-23 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 123423 AAAAAGTCA--TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 123480 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| ||||||||||||||||||||| || Sbjct 123481 GCTCTAACCAACTGAGCTAATGGGCCGACG 123510 >seq1722 Length=127856 Score = 120 bits (132), Expect = 2e-22 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 27329 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 27388 Query 11516 TGAGCTAATGGGCCGTCGAC 11535 |||||||||||||||| ||| Sbjct 27389 TGAGCTAATGGGCCGTTGAC 27408 >SEQ10472 Length=36223 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 28489 AAAAAAGGGAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 28430 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 28429 GCTCTAACCAACTGAGCTAATGGGCCG 28403 >seq5683 Length=278653 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 120703 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 120644 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 120643 TGAGCTAATGGGCCG 120629 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261277169371084