Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 134 1e-26 seq2773 125 6e-24 seq4618 111 1e-19 seq3747 91.5 1e-13 SEQ37497 87.8 2e-12 >SEQ58356 Length=38410 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| || | |||||| | ||||| ||||| ||||| || | || || ||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| || ||||||| || | ||||||||| || ||| Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| ||||| || | ||||||||| || || | | ||| || | | || || Sbjct 35160 ATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACC 35219 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || ||||| |||||||| || |||||||| Sbjct 35220 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2773 Length=85211 Score = 125 bits (138), Expect = 6e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| |||| || || || |||||||| | |||||||||||||| | ||| | Sbjct 66400 TTTGCATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGT 66341 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| || |||| | ||| || |||||||| || | ||||| | | ||||| Sbjct 66340 AATCAGACA--GTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTG 66283 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| ||||| |||||||||||||| | |||||| || || || | | || || | Sbjct 66282 ATCGGGAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGA 66223 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || |||||||||||||| || || |||||||| |||||||| Sbjct 66222 TGGCTCAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || || || ||||||||||| ||||| ||||| | ||| || || Sbjct 67532 CCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG-- 67475 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | ||| ||||| |||||||| ||||||| | || || || ||||||| Sbjct 67474 ATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 67415 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||||| || ||||| | | || || | | || | Sbjct 67414 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTA 67355 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||| |||||||||||||| || |||||||||||||| Sbjct 67354 CTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| |||| || || || |||||||| | |||||||||||||| | ||| | Sbjct 66856 TTTGCATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGT 66797 Query 94833 AATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||| | | ||||| | ||| || || |||||||| ||||||| | || || || Sbjct 66796 AAT--CAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTG 66739 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||| || ||||| ||||| | ||||| || || || | | || || | Sbjct 66738 GTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGA 66679 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || || ||||||||||| || ||||| Sbjct 66678 AGGTTCAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || |||| || | ||| | |||||| || ||||| | Sbjct 66633 AAAAATTTGCATACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAAT 66574 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || || ||| ||||| || || || |||| || | | ||| Sbjct 66573 GTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTG 66514 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || ||||| || ||||||||||| | ||||| ||||| ||| ||| ||| || Sbjct 66513 CTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATC 66454 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || || || || || |||||||| |||||||| ||||| Sbjct 66453 TGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || || | || | ||| | ||| || || ||||| | Sbjct 67089 AAAAATTTGCATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAAT 67030 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | || ||| | ||| ||||| || ||||| ||||||| | || Sbjct 67029 GTTGTAGTCAG--AGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGC 66972 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || |||||||| || ||||| ||||| | ||||| || || || | | || Sbjct 66971 TGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTA 66912 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || ||||| |||||||||||||| || |||||||| ||| Sbjct 66911 TCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGC 66852 Query 95006 AT 95007 || Sbjct 66851 AT 66850 >seq4618 Length=10119 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| || ||||| || | |||||||| ||||| | Sbjct 440 AAAATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATA 381 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | ||| | ||| || |||||||| || ||||||| | || ||| Sbjct 380 TTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGC 321 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || ||||| |||||||| | |||||| ||||| || | | ||||| Sbjct 320 TGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCT 261 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| ||||||||||| ||||| | || || || || || ||||| Sbjct 260 GATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| || ||||| || | || ||||| || || | Sbjct 212 AAAATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATA 153 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | ||| | ||| || ||||| || ||| ||||||| | || ||| Sbjct 152 TTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGC 93 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || |||||||| ||||| |||||||| | ||||| ||||| || | | ||||| Sbjct 92 TGGTCTGGAGGGATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCT 33 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | || || |||| ||||||||||| || Sbjct 32 GATGGCTCAACTTCAAGAGTGATGGTTTTGCC 1 >seq3747 Length=111519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || |||||||||||||| || || || || || | ||| || || ||||| ||| Sbjct 105186 CTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTTTCGATT 105127 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||||| | | ||||| |||| |||||||| || || ||||| || |||||||| ||| Sbjct 105126 GTGTCAGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAAATC 105067 Query 95003 TGCATGCTTA 95012 ||||| |||| Sbjct 105066 TGCAT-CTTA 105058 >SEQ37497 Length=345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || |||||||| ||| |||| || | || ||||| ||||| || ||||| ||||| Sbjct 313 ATCTTCAAGCTGTTTGCCGGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 254 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| || | | ||||| | | || || |||| ||||| Sbjct 253 GTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 194 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| | || || || || || ||||| Sbjct 193 GGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447914865141240