Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_006637.1 Length=14489 Score E Sequences producing significant alignments: (Bits) Value seq5180 91.5 1e-14 seq3184 91.5 1e-14 seq2126 91.5 1e-14 seq1538 91.5 1e-14 seq1088 91.5 1e-14 seq567 91.5 1e-14 seq357 86.0 6e-13 seq3358 84.2 2e-12 seq7321 82.4 7e-12 seq232 82.4 7e-12 >seq5180 Length=127954 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||| Sbjct 49448 ATAAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTTTTA 49507 Query 8403 ACAATATAGAT 8413 | ||||||||| Sbjct 49508 ATAATATAGAT 49518 >seq3184 Length=134630 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||| Sbjct 109579 ATAAAAACCCATTTTATCGTATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTTA 109520 Query 8403 ACAATATAGAT 8413 | ||||||||| Sbjct 109519 ATAATATAGAT 109509 >seq2126 Length=172544 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 || | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| Sbjct 27100 ATTAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTTA 27041 Query 8403 ACAATATAGAT 8413 | ||||||||| Sbjct 27040 ATAATATAGAT 27030 >seq1538 Length=580145 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||| Sbjct 472731 ATAAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTATCTTA 472790 Query 8403 ACAATATAGAT 8413 | ||||||||| Sbjct 472791 ATAATATAGAT 472801 >seq1088 Length=204830 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| Sbjct 35579 ATAAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTTA 35638 Query 8403 ACAATATAGAT 8413 | |||| |||| Sbjct 35639 ATAATAAAGAT 35649 >seq567 Length=842831 Score = 91.5 bits (100), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| ||||||||||| ||||| || |||||||||| Sbjct 18748 ATAAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCACTTATATTCTCTTA 18689 Query 8403 ACAATATAGAT 8413 | ||||||||| Sbjct 18688 ATAATATAGAT 18678 >seq357 Length=318485 Score = 86.0 bits (94), Expect = 6e-13 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| || |||||||||||||||||| ||||||||||| ||||| ||| |||||||||| Sbjct 207041 ATAAAAATCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTTA 207100 Query 8403 ACAATATAGAT 8413 | |||||||| Sbjct 207101 ATGATATAGAT 207111 >seq3358 Length=101443 Score = 84.2 bits (92), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 5/71 (7%) Strand=Plus/Minus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||| Sbjct 18467 ATAAAAACCCATTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTT- 18409 Query 8403 ACAATATAGAT 8413 ||||||||| Sbjct 18408 --AATATAGAT 18400 >seq7321 Length=172743 Score = 82.4 bits (90), Expect = 7e-12 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| ||||||||||||||||||||| | |||||||| ||||| ||| |||||||||| Sbjct 123474 ATAAAAACCCATTTTATCATATAAATACGTTGGCCACAAAATTTCGCTTATATTCTCTTA 123533 Query 8403 ACAATATAGAT 8413 | || |||||| Sbjct 123534 ATAACATAGAT 123544 >seq232 Length=499696 Score = 82.4 bits (90), Expect = 7e-12 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8345 ATAANAACCCATTTTATCATATAAATTCACTGGCCACAGAATTTTGCT--TATTCTCTTA 8402 |||| |||| ||||||||||||||| ||||||||||| ||||| ||| |||||||||| Sbjct 55469 ATAAAAACCAGTTTTATCATATAAATACACTGGCCACAAAATTTCGCTTATATTCTCTTA 55410 Query 8403 ACAATATAGAT 8413 | |||||| || Sbjct 55409 ATAATATAAAT 55399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46210488470884