Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq9217 199 5e-47 seq6339 196 6e-46 seq3902 187 3e-43 seq2275 80.6 3e-11 >seq9217 Length=272103 Score = 199 bits (220), Expect = 5e-47 Identities = 148/173 (86%), Gaps = 10/173 (6%) Strand=Plus/Plus Query 1271 AAAAAGTTTGTAAAATCCAAAAGTGCACGCCTCATAATCTCATTTTTC-ATAATAAAGTT 1329 || ||||||| ||||||||||||||||||||||||||||| ||||| | |||||||| || Sbjct 101097 AATAAGTTTGAAAAATCCAAAAGTGCACGCCTCATAATCTAATTTTGCCATAATAAAATT 101156 Query 1330 GATTAAAATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAA 1389 |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct 101157 GATTAAAATAAAATACAAATACTTTTAAATCTTTGGCGCGATTGTCTACCCAGAAAAGAA 101216 Query 1390 AGGTACAAAGGTACTGCGTATGGATTGTAAACGAACCTTATTAACATAGATAT 1442 ||| | |||| ||| |||||| ||||||||| | |||||||||| Sbjct 101217 AGG---------AATGCGCATGTGTTGTAAGCGAACCTTACTTACATAGATAT 101260 Score = 158 bits (174), Expect = 2e-34 Identities = 148/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 15544 TATTTAAAAATCAAAATGTCATAAGTGTTGAAAATAGAATTTTTCCATGACATTTATGTG 15603 |||| || | ||||||||||||| | |||||| ||| ||||| |||||||||||||| Sbjct 101314 TATTGAATTAGCAAAATGTCATAATTATTGAAACTAGTGTTTTTATATGACATTTATGTG 101373 Query 15604 TAAACACAGTTCTACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCCAAGAAATC 15663 |||| | |||||| || || |||||||||||| ||||| |||||| || | Sbjct 101374 TAAATATTGTTCTAAAAATGCGATAGAAAATAAGTAGAGCCAATTTTGGT------TTTG 101427 Query 15664 GCCTGATTTTTGTAAGGCGAGTGTAGAGCACAACCTCATCCGCTTCGCTTATGAGGCGTG 15723 | ||||||||||||||||| ||||||||| | |||| ||||| |||||||||||||| Sbjct 101428 ACTTGATTTTTGTAAGGCGAAAGTAGAGCACTATTTCATTCGCTTTGCTTATGAGGCGTG 101487 Query 15724 CAAAAGACT 15732 ||| | ||| Sbjct 101488 CAATATACT 101496 Score = 105 bits (116), Expect = 8e-19 Identities = 68/73 (93%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 15305 ATAGATATAGATATACAAACGATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAAC 15364 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| Sbjct 101253 ATAGATATAGATATACAAACGATAAGTGGATTTT-AGTTTATTGCTAATTATAATTAAAT 101311 Query 15365 TACATTGAATTAG 15377 || |||||||||| Sbjct 101312 TATATTGAATTAG 101324 >seq6339 Length=27239 Score = 196 bits (216), Expect = 6e-46 Identities = 147/172 (85%), Gaps = 13/172 (8%) Strand=Plus/Plus Query 1271 AAAAAGTTTGTAAAATCCAAAAGTGCACGCCTCATAATCTCATTTTTCATAATAAAGTTG 1330 |||||||||| |||||| |||||| ||||||||||||||| ||||| ||||||||| ||| Sbjct 1930 AAAAAGTTTGAAAAATCTAAAAGTACACGCCTCATAATCTAATTTTCCATAATAAAATTG 1989 Query 1331 ATTAAAATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAAA 1390 |||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1990 ATTAAAAT-AAATACAAATACTTTTAAATCTTTCGCGCCGTTGTCTACCCAGAAAAG--- 2045 Query 1391 GGTACAAAGGTACTGCGTATGGATTGTAAACGAACCTTATTAACATAGATAT 1442 |||||||||||| ||| |||||| |||||||| |||||||||| Sbjct 2046 -----AAAGGTACTGCGCATGTGTTGTAAGCGAACCTT----ACATAGATAT 2088 >seq3902 Length=181361 Score = 187 bits (206), Expect = 3e-43 Identities = 144/172 (84%), Gaps = 12/172 (7%) Strand=Plus/Plus Query 1271 AAAAAGTTTGTAAAATCCAAAAGTGCACGCCTCATAATCTCATTTTTCATAATAAAGTTG 1330 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 13153 AAAAAGTTTGAAAAATCCAAAAGTGCACGCCTCATAATCTAATTTTCCATAATAAAAATG 13212 Query 1331 ATTAAAATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAAA 1390 ||||||||||||| ||||||||||||||||||| || | |||||| ||||||||||| Sbjct 13213 ATTAAAATAAAATGCAAATACTTTTAAATCTTTGGCACGATTGTCTACCCAGAAAAG--- 13269 Query 1391 GGTACAAAGGTACTGCGTATGGATTGTAAACGAACCTTATTAACATAGATAT 1442 |||||||||||| || |||||| ||||| || |||||||||| Sbjct 13270 -----AAAGGTACTGCGCATATGTTGTAAGCGAAC----TTTACATAGATAT 13312 Score = 163 bits (180), Expect = 4e-36 Identities = 142/177 (80%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 15556 AAAATGTCATAAGTGTTGAAAATAGAATTTTTCCATGACATTTATGTGTAAACACAGTTC 15615 ||||| ||||||||||||||| ||| |||||| |||| ||||||||||||| | |||| Sbjct 13391 AAAATCTCATAAGTGTTGAAACTAGTGTTTTTCTATGAGATTTATGTGTAAATATTGTTC 13450 Query 15616 TACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCCAAGAAATCGCCTGATTTTTG 15675 || || || |||||||||||| |||| | |||||| || | || | ||||||||| Sbjct 13451 TAAAAATGCGATAGAAAATAAGTAGAAATAATTTTGGTTC------TCACTTGATTTTTG 13504 Query 15676 TAAGGCGAGTGTAGAGCACAACCTCATCCGCTTCGCTTATGAGGCGTGCAAAAGACT 15732 ||||||||| ||||||||| | | || || || ||||||||||||||||| | ||| Sbjct 13505 TAAGGCGAGAGTAGAGCACTATTTTATTCGTTTTGCTTATGAGGCGTGCAATATACT 13561 Score = 111 bits (122), Expect = 2e-20 Identities = 69/73 (95%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 15305 ATAGATATAGATATACAAACGATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAAC 15364 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| Sbjct 13305 ATAGATATAGATATACAAACGATAAGTGGATTTT-AGTTTATTGCTAATTATAATTAAAT 13363 Query 15365 TACATTGAATTAG 15377 ||||||||||||| Sbjct 13364 TACATTGAATTAG 13376 >seq2275 Length=35474 Score = 80.6 bits (88), Expect = 3e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 15635 AAATAGAGAAAATTTTAGTCCAAGAAATCGCCTGATTTTTGTAAGGCGAGTG--TAGAGC 15692 ||||||||| | ||||| | ||| |||| || | ||||| |||||||||| | |||| | Sbjct 16575 AAATAGAGACATTTTTACTTCAAAAAATTGCTTAATTTTGGTAAGGCGAGAGAGTAGAAC 16634 Query 15693 ACAACCTCATCCGCTTCGC-TTATGAGGCGTGCAA 15726 || ||||| ||| || || ||||||||||||||| Sbjct 16635 ACTGCCTCAACCGTTTTGCGTTATGAGGCGTGCAA 16669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63256441559611