Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 93.3 4e-14 >SEQ58105 Length=99015 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||||||||| || | |||||| || ||||| || || || || || |||| ||||| Sbjct 16435 TACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAACCCATAGAAGAATCTGGCCTCA 16376 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | ||||||||| ||||||| | | | |||||||| || ||||||||| Sbjct 16375 GTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTTTCATTGACAATTCCATCAGAT 16316 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || ||||||||||| | | | ||| || |||| || || ||| |||| ||| | Sbjct 16315 GCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTCTCACAATCCTTTAAACTTTCC 16256 Query 21950 CAATCTAATAAATC 21963 ||||| |||||| Sbjct 16255 CAATCCGGTAAATC 16242 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 21518 TCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577 |||||| || || ||||| ||||| | ||| | ||| ||||||||||| || || ||| Sbjct 17299 TCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCA 17240 Query 21578 AATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT 21637 || ||||| || ||||| ||||| || || |||||||| || | ||||| || || Sbjct 17239 AAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAAT 17180 Query 21638 GTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATC 21696 || | | | || | | ||||||| | ||||| | |||||| | ||||| |||| Sbjct 17179 GTTGCAGTTTTGCTTGCA-ATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGG 17121 Query 21697 AATTGTATCAATAGCTTTTAA-AAGA 21721 | || || ||||| || || |||| Sbjct 17120 CAAAGTTTCTATAGCATTAAATAAGA 17095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 21116 AAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATA 21175 |||| || | |||||| |||||||| |||| || |||||||| || | | ||| Sbjct 18335 AAAACATGTTATTAAAACTCAGCATCCAATGTAAACACATTATCCTCAGGATCAGCCATT 18276 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | |||| ||| || || |||| ||| | || || || ||||| ||||||||||| || Sbjct 18275 ACTCCCCATTTCTGGTATTCACCTACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAA 18216 Query 21236 GATAT-AGATTCCATAAAATCAAATGGATT 21264 || || || ||| ||||| ||||||||||| Sbjct 18215 GAGATGAGGTTC-ATAAAGTCAAATGGATT 18187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531454275927160