Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_007039.1 Length=17355 Score E Sequences producing significant alignments: (Bits) Value seq5308 84.2 2e-12 >seq5308 Length=24103 Score = 84.2 bits (92), Expect = 2e-12 Identities = 178/262 (68%), Gaps = 13/262 (5%) Strand=Plus/Plus Query 6096 CACCAATACTGATGACATTTTTCGTTACC----ACCTTCTTTGATCTTCGTTAACATCAC 6151 ||||||||||||| | | ||||| ||| || | |||| |||| |||||| Sbjct 7334 CACCAATACTGATAATACTTTTCTCCACCGATAACTCTAGTTGAA----GTTACCATCAC 7389 Query 6152 TATGACATGGCTATGTTGTTGCCATACAACCTTCCAAAAGTCAGCTACGGTATTTTTCAT 6211 ||| |||| ||| || ||| | || | | | | ||||| || ||| | || Sbjct 7390 TATCACATATGAATGCTGCTGCAACACGAGCCTAAAGAAGTCTGCAGTGGTGTCCGCCAA 7449 Query 6212 AGGTCCCTGCATAGCGATGAACTTTTTCTTTTCTTCGAATCCATTTATCCAGTTCGCATG 6271 || | || || ||||||||||| ||| ||||| || ||||| ||||| ||||| || Sbjct 7450 GGGAACTTGAATGGCGATGAACTTCTTCGGCTCTTCAAAGCCATTGATCCAATTCGCGTG 7509 Query 6272 TATGTAATCTGGCTCGCCGTTTTTCGACTCTATCACAACCCGTGAATCGTCCCAACATGG 6331 ||||| || | | || ||| | |||| |||||| ||||||| || || ||||| Sbjct 7510 GATGTAGTCCGATCCTCC---TTTAGTGTCTAGCACAACGCGTGAATGCTCGCAGCATGG 7566 Query 6332 AATATC-GAGATAACGGTTTTT 6352 ||| || ||| | | ||||||| Sbjct 7567 AATGTCAGAG-TGAAGGTTTTT 7587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55374566796206