Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 246 3e-60 seq2773 113 4e-20 seq5513 107 2e-18 seq4618 93.3 4e-14 >SEQ21942 Length=42535 Score = 246 bits (272), Expect = 3e-60 Identities = 356/498 (71%), Gaps = 6/498 (1%) Strand=Plus/Plus Query 32170 CGTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGT 32229 ||||| || |||||||| || ||||| || ||| | || |||||| |||| || || Sbjct 34600 CGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGT 34659 Query 32230 GCCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGG 32289 || | || ||| | | ||||| | ||||||||||| || || || ||||| ||||| Sbjct 34660 ACCCATTCCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGG 34719 Query 32290 ACTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGC 32347 | | ||||| | ||| || | || || ||||| | || ||||||| || ||| Sbjct 34720 AATTAACGACAGTTTGAAA--GAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGC 34777 Query 32348 AAAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCG 32407 | || || | ||||| || ||| | || |||||||||||||| || |||||||||| Sbjct 34778 AGCGGGCGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCA 34837 Query 32408 CAGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCG 32467 |||||||| |||| | ||||||||||| ||||||||||||||||| ||| ||||| | Sbjct 34838 CAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCT 34897 Query 32468 GCCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCG 32527 || || | ||| | | || || | ||||| || || || ||||| ||| | Sbjct 34898 TTAAAACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCA 34957 Query 32528 GATCCCTTTTATTTTATGCACGACGCGG-AAAAACGGCACGTGTTTGTCGATTCCGTCAA 32586 ||||| || || || | | || || ||||| | ||| ||||| | || || || Sbjct 34958 GATCCATTCTACTTCTTTGATGATAAGGTAAAAAGAGATCGT-TTTGTGGCATCAGTGAA 35016 Query 32587 AGAGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGG 32646 ||| || | || |||||||||||| ||||| || |||||||||||||||||||| || Sbjct 35017 AGACTTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGG 35076 Query 32647 CGGCAAAGGTGCCAACCC 32664 || |||||||| || || Sbjct 35077 TGGAAAAGGTGCTAATCC 35094 >seq2773 Length=85211 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| ||||| || || || |||||| | ||| ||| ||| Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAG-CCAT 66451 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || ||| | | | | ||||| ||||| || ||||||||| |||| || | Sbjct 66452 CAGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACC 66511 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| | || |||| ||| ||||| ||| | ||||||| ||| || | || || | Sbjct 66512 AGCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACA 66571 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||||||||| | || | || || | ||||||| || Sbjct 66572 ACATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGG 66620 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||||||||| || ||||| || || ||||| ||||||||||| ||| | || ||| | Sbjct 66162 AAAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAG-C 66220 Query 115342 CAGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 || | || || ||| | | |||||| |||||| || |||||||| |||| | Sbjct 66221 CATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCG 66280 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 ||||||| | ||||| | || || ||||| | ||||||| || || | |||| Sbjct 66281 ATCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATT 66340 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 | ||||||||||| || ||||| | || |||| || | || ||||| |||| Sbjct 66341 ACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 66394 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || ||||| || |||||||| | ||| || | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| ||||| ||||| |||||| |||| || || Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||||| | ||| || || ||| | ||||||| |||| || | || || || Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||||| ||| | || | || || | ||||||| |||| Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGGAA 67306 >seq5513 Length=124375 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 109047 CGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAAT 109106 |||||| || ||| | ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct 11116 CGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAAAT 11057 Query 109107 AATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTG 109166 ||| | ||| | || || ||||| || || || |||||| |||| | || || || || Sbjct 11056 CATGAGATGGGTGGAAGGCGACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAATG 10997 Query 109167 TCCGTTC 109173 ||||||| Sbjct 10996 TCCGTTC 10990 >seq4618 Length=10119 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || || |||||||| || | ||| ||| ||| | Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAG-CCATC 260 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || || |||||| || ||||| || |||| || || Sbjct 261 AGACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 320 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | |||||||||||| | ||||||| | || | | || || || Sbjct 321 GCAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 380 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||| | ||| |||| |||||||| |||| || Sbjct 381 TATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424995855803080