Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 196 5e-45 seq2773 125 7e-24 seq5513 100 3e-16 seq2744 87.8 2e-12 >SEQ21942 Length=42535 Score = 196 bits (216), Expect = 5e-45 Identities = 348/504 (69%), Gaps = 8/504 (2%) Strand=Plus/Plus Query 23635 TCGTCGCCGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAG 23694 |||||| || || ||||| |||||||| || || || ||| |||| || ||||| || | Sbjct 34599 TCGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGG 34658 Query 23695 TGCCCGTGCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGG 23754 | ||| | || ||| | ||||| | || ||||| || | || || || ||||| || | Sbjct 34659 TACCCATTCCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACG 34718 Query 23755 GAATTAACGACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGC- 23813 ||||||||||| | | ||| | || |||||| | || |||| || || ||| Sbjct 34719 GAATTAACGACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCA 34778 Query 23814 GCGGGCCGCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCG 23873 ||||| || | |||||||| || || |||||||| || ||||||||| | || || || Sbjct 34779 GCGGG-CGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCA 34837 Query 23874 CAGAAGGGAGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCA 23933 |||||||| |||| | |||||||| || || || |||||||| || ||||| | Sbjct 34838 CAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCT 34897 Query 23934 ACGAAACTGGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCT 23993 |||| || || | |||| || || || || ||||| |||||||| || | Sbjct 34898 TTAAAACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCA 34957 Query 23994 GATCCGTTTTATCACATGCACGAGCCCAGCGT---ACGCCGTGTGTTTATCGACTCTGTC 24050 ||||| || || | | | || | || | | | ||| | | || || Sbjct 34958 GATCCATTCTACTTCTTTGATGA---TAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTG 35014 Query 24051 GAAGAGTTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCC 24110 |||| || | ||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 35015 AAAGACTTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCT 35074 Query 24111 GGCGGCAAAGGGGCAAATCCCAAC 24134 || || ||||| || ||||| ||| Sbjct 35075 GGTGGAAAAGGTGCTAATCCTAAC 35098 >seq2773 Length=85211 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | || | || ||||| |||||||||||||| || | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || |||||||| || | || | || ||||||||||||||| Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||||| ||| | | || | |||||| | | ||| | Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || |||||||| || || || ||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || || | || || || | || || |||||||||||||||||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || ||||| || |||||| |||| | ||||||||| || |||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | || | ||||| | | ||| | Sbjct 66272 ATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAAC 66214 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || || || || || || |||||||| Sbjct 66213 CTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || || | || || || | || || |||||||||||||||||||| | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || ||||| || || || || |||| | ||||| ||||| |||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| |||| | | | ||| | ||||| | | || | Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTT-GGCTTTAACATTCTCAATTGTATCTGAAGGTTCAAC 66670 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || ||||| || ||||| ||||| Sbjct 66669 TTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | || ||||| |||||||||||||| || Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| || || || ||||| || || |||| | ||||| ||||| |||||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| |||| | | | ||| | ||||| | | || | Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTT-GGCTTTAACATTCTCAATTGTATCTGAAGGTTCAAC 66898 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || ||||| || || || || ||||| Sbjct 66897 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| | ||||| || | || || || |||||||||||||| || Sbjct 67533 GCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 67474 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| ||| || || || || || || || |||| | ||||| ||||| ||||| Sbjct 67473 TAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 67414 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||| |||| | ||| | ||||| | | || | Sbjct 67413 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTAC 67354 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || ||||| || || || |||||||| Sbjct 67353 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 >seq5513 Length=124375 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 113785 CGGCTTTTACTATTTGAATCGTGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAGAT 113844 ||| || |||||| | ||| ||||||||||||||||||||||||||||||||||| || Sbjct 11116 CGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAAAT 11057 Query 113845 AATGAGATGGAGACCCGGCGACGATCCTCTCGCCGACCACAAACGTTGGGCGCCTCACTG 113904 ||||||||| |||||||||||| | ||||| || | ||||| ||||| || Sbjct 11056 CATGAGATGGGTGGAAGGCGACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAATG 10997 >seq2744 Length=156805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | ||| || ||||| | || || || ||||| |||||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| | | ||||||||| || ||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| ||| | | || | ||| || | | || | Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||||| || || || || ||||| |||||||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471616551154560