Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_007989.1 Length=8284 Score E Sequences producing significant alignments: (Bits) Value seq1360 93.3 2e-15 >seq1360 Length=330242 Score = 93.3 bits (102), Expect = 2e-15 Identities = 215/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 6831 CTCCATTCTCACAACAGTTACGCCTACAAATATTTTACGTGCGAGTTGTTGAATTTAGTG 6890 || ||| |||| ||| |||||| | || || ||||| || || |||||||||| | Sbjct 314277 CTACATACTCAGAACTTTTACGCGTTCAGATTTTTTATATGTGAAGTGTTGAATTTCATC 314336 Query 6891 AATGTTGTAGGACAAATATGTTTCATGAATGCCTTTCTCGGTGAAGATTTTGCATTGTAC 6950 ||||| ||||| ||||| | ||||||| || ||| || | || || || || ||| Sbjct 314337 AATGTCGTAGGTCAAATCTATTTCATGGATTTCTTCCTGGATGGTGAATTCTCAACATAC 314396 Query 6951 GGAATTTATGTAATCATGTATAACCAAC--GACTTACA-GAAAGTGTTAAAAATCCTATG 7007 ||| |||| ||| |||| | || || | | ||| | | || | || ||| Sbjct 314397 GGACGAGATGTCATCCGCTATACCGAAATGGAGCCAGAAGAACGAG---AAGACCCAATG 314453 Query 7008 GAACGTCTATTTCCTAAAATGACTAAATGTGTTTACCATAAATACGGCCCTAGCGGTTCC 7067 | | | | || |||||| | || ||||| || ||| |||||||| || || | Sbjct 314454 GCAAGAGTGTTCCCTAAAGTTACCAAATGCACTTTCCACAAATACGGTCCATCAGGGACT 314513 Query 7068 ATAGAAAACAGGGATGGAATTTGTGTCCTGCCGCAGAATTTTGTCAATGGGAAGATGTAT 7127 | | || || || | |||||| |||||| ||| | ||||||| || || ||| Sbjct 314514 GTTCAGAAGTTTGACGGTCTGTGTGTCTTGCCGCTGAACATCGTCAATGAAAAAATCTAT 314573 Query 7128 GTCTTCTTATGGTTTTGGTTT 7148 || ||| |||||||||||||| Sbjct 314574 GTGTTCCTATGGTTTTGGTTT 314594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26373658612448