Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 269 2e-67 seq2773 100 2e-16 seq2130 95.1 1e-14 SEQ58356 91.5 1e-13 seq4618 91.5 1e-13 seq2744 84.2 2e-11 >SEQ21942 Length=42535 Score = 269 bits (298), Expect = 2e-67 Identities = 781/1189 (66%), Gaps = 25/1189 (2%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 |||||||| ||||| | | || ||| | || || ||||||||||| |||||||||||| Sbjct 35784 ATATTCATAGCATTCAATAAGTCCCCAGTATCTGCATCTATTTCCCACGCAAACAAACCT 35725 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 || | ||| || | | ||||| ||||| ||||||| || | | || ||| Sbjct 35724 CCAAGCTTATTATTTCTAACATACTTTCCTTTCTCTATAACGGATCTTGGATTGTCGTAT 35665 Query 95949 GAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-AA 96007 | ||||| ||| ||| ||| | || || || | |||| ||| || || ||| || Sbjct 35664 GTAATTAGATCCCCTGTGGCAGGACGGAAGACATATGGCGCTTGTGCCACATTATCATAA 35605 Query 96008 TTTAACA---ATATATTTGTTT--ATTTCGTTTTTGATTTGGCGATAATCAACAACGCCA 96062 | ||| || | || | ||||| ||| |||| | || || || || ||| Sbjct 35604 TGGAACTCCCATTTCCCTGCTGCAATTTCATTTGCAATTTCTCTGTAGTCGACCACACCA 35545 Query 96063 TCTTCCCAAGTGCCCGAA-ACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 || | ||| || || | | || || || ||||| | ||| | |||| | | Sbjct 35544 TCCTGCCACGTCCCTTTACAAGGACCTGTGGCTACTCCAGTGAAAGGA-TTATTATCTGT 35486 Query 96122 GTAATTTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCG 96181 ||| ||| ||||||||||| || ||||||||||| || || || || ||||| || Sbjct 35485 GTAGTTTTGGACTCCAGTCCAACCACGACCGTACATCGCTACACCAACTATAATCTTCTT 35426 Query 96182 CGGGTCCACGCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTT 96241 |||| || ||||| | ||| |||||| || ||| || |||| || || Sbjct 35425 AGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCTTT 35366 Query 96242 TGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAA---TCAATGTTTGACCA 96298 ||| ||||| || || || | | ||||| | ||| | | ||| |||||||| Sbjct 35365 TGGATTCCATGCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTGTCA---TTTGACCA 35309 Query 96299 CGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTC 96358 ||| |||||||| ||||| ||||| | ||| || | || | | | || || Sbjct 35308 CGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGCTGAGCTTTCCT 35249 Query 96359 GTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGT 96418 ||| | ||||| || || || || ||||| || || ||||| || || | Sbjct 35248 GTAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTT 35189 Query 96419 TTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCAATTCCTTTAATAGAATGT 96477 || || || | | || | | ||||| | ||| | || || || || | || | Sbjct 35188 CTTACCGGTCTCC-GTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATCAGCTGGA 35130 Query 96478 TGTACGTGTCAGCGTCGCGCTCTTTGTTGC--CGAGCGTCGGGTTGGCGCCTTTACCGCC 96535 || ||| |||| |||| | | |||| | || || || ||||| || || Sbjct 35129 CATAAACTTCACCGTCA-----TTTGGTCCACCGAGGTTAGGATTAGCACCTTTTCCACC 35075 Query 96536 CGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCT 96595 || || ||||| || ||||| || |||||||| ||||||||| || | || ||| | Sbjct 35074 AGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAGTCTTT 35015 Query 96596 GACGGAGTCTACAAACACGCGCCGTTTTT-CCGCGTCGTGCATGTAATAGAACGGGTCGG 96654 || || | ||||| ||| | ||||| || || | | | | ||||| || || | Sbjct 35014 CACTGATGCCACAAA-ACGATCTCTTTTTACCTTATCATCAAAGAAGTAGAATGGATCTG 34956 Query 96655 ACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCG 96714 || ||||||||| ||||| || || |||| || || | || |||| |||| | Sbjct 34955 CCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTTAAAG 34896 Query 96715 CCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCG 96774 ||||| || ||||||||||||||||| || |||||||| | |||| ||||| || | Sbjct 34895 ACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTG 34836 Query 96775 GTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGC 96834 ||||||||| || |||||||||||||| |||| |||||| || || || || || Sbjct 34835 GTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGC 34776 Query 96835 AAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCCGT 96894 |||| ||||||| |||| ||||| || || ||| | ||||||| |||| Sbjct 34775 AAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTTAATTCCGT 34716 Query 96895 CGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTT 96954 | |||||||| ||||| ||||| ||||| | | ||||| | || || | || || | Sbjct 34715 CACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCGGAATGGGTACCT 34656 Query 96955 TGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 | || || || || || | | || || ||||| ||||||||||| || Sbjct 34655 TATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGC 34607 >seq2773 Length=85211 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| || | || || || ||||| ||||| ||||||||||| | | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| |||| ||||| || |||||| ||| Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| | ||| || | | | ||| || ||||| | Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| || || || || || || ||||| ||||| || |||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | || || |||||||| ||||| ||||||||||| | Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || |||| ||| || || ||| | ||||| ||||||||||| ||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 16829 ACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCG--GGCTCC 16885 | ||| || |||| | | | |||| |||| | | | || | ||| | | || || Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTG--GCTTTAACATTCTCA-ATTGTATCTGAAGGTTCA 66900 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || ||||| ||||| || || || |||||||| || |||||| Sbjct 66899 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | || || || ||||| ||||| || |||||||| | | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || |||| ||| || || ||| | ||||| ||||||||||| ||| Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || ||| || || | | | ||||| || || Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCT--TTGACATTCTCAATTGTGTCCGAAGGTTCAA 67127 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || || || ||||| |||||||| ||||| Sbjct 67126 CTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 >seq2130 Length=187805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 ||||||||||||||||| || || | ||||||||| | || | || || |||||| Sbjct 86219 GGCGGCGTGGGGCTGAACCTGTGCGGGGCCAACCACCTGCTGGTGCTCGACCCCCACTGG 86160 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGC 29455 ||||||||| | ||| |||||||||| ||||||| |||| ||||||||| Sbjct 86159 AACCCGCAGCTCGAGCAACAGGCGCAGGACCGCATCTACCGCGTGGGCCAGC 86108 >SEQ58356 Length=38410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 16704 TTTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGT 16763 |||||| ||||| || ||||| || | ||||| || |||||||| || || ||||||| Sbjct 35036 TTTACC-TCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGT 35094 Query 16764 CGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 ||| | || | | || |||| ||||| || ||| | || | || || || ||| Sbjct 35095 CGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCG 35154 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTC-ACCTGGCCCACAGTGTCGCCGGGC 16882 || | |||||||| || ||||| ||||| || | | | ||| ||| || | Sbjct 35155 GTGGAATACCCTCTTTATCTTGAATTTT-TGCTTTTACATTTTCAATAGTATCGGAGGCC 35213 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || | |||||||||||| || || || ||||| || || ||||||||| Sbjct 35214 TCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq4618 Length=10119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| | |||||||||| ||| || || || || ||||| || |||||||| | Sbjct 429 CCCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGA 370 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | |||||||||||| | || |||| ||| ||||| || Sbjct 369 GAGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGG 310 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||||| ||| || | | | ||||| ||||| Sbjct 309 GATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAAC 250 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||| || |||| || ||||| ||||| ||||| Sbjct 249 TTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780 |||||||||| ||| || ||||| || ||||| || |||||||| | | || | | Sbjct 644 CTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCA 585 Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840 || || | || ||||| ||| | || |||| ||| ||||| || | ||||||||| Sbjct 584 TCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTG 525 Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| ||| || | | | ||||| ||||| ||| | ||||| Sbjct 524 TCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATA 465 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||| || ||||| ||||| ||||| Sbjct 464 GTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| | |||||||||| ||| || ||||| || ||||| ||||||||||| | Sbjct 156797 CCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGA 156738 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | || || | || || || ||| | ||||||| ||| ||||| || Sbjct 156737 GAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGG 156678 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||||| ||| || | | | |||||| || || Sbjct 156677 GATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTAC 156618 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||| || ||||| || || || || || |||||||||||||| || Sbjct 156617 CTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404756435345410