Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1225 158 8e-34 seq2773 149 4e-31 seq5513 138 8e-28 SEQ66911 116 2e-21 SEQ58356 100 2e-16 seq2744 100 2e-16 seq4618 86.0 4e-12 >seq1225 Length=303902 Score = 158 bits (174), Expect = 8e-34 Identities = 128/155 (83%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || || ||||| || || ||||||||| | ||||| |||||| Sbjct 172532 ATGGGGTCCGTGAACGTGAACCGGAATGTCGCAGATGCGTTCTACAGATACAAGATGCCG 172591 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||||||||||| || ||||| || || ||||| || || || |||||||| |||||| Sbjct 172592 CGCATCTGCGCCAAAGTGGAGGGCAAAGGCAACGGCATCAAGACGGTCATTGTGAACATG 172651 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || |||||||| ||||| ||||| | |||||||| Sbjct 172652 CCCGAAGTCGCCAAGGCTCTCGGCAGGCCTGCCAC 172686 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || || |||||||| || ||||| | ||| ||||| |||||||| || || || || ||| Sbjct 174140 TTCATCCGCAAGTTCGTCCTGTGCCCGGAGTGCGACAACCCGGAAACGGAACTGATCGTG 174199 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || |||||| | ||||| || || ||||| ||||| |||||||| ||||| || |||| Sbjct 174200 TCCACCAAGCGGAACACGATATCGCAGGGGTGCAAGGCGTGCGGGTACCACGGACAGCTC 174259 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || |||||||||||||| |||||||| |||||||| || Sbjct 174260 GACTTCAACCACAAACTCAACACGTTCATACTAAAGAATCCGCC 174303 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 7174 TGTACGACCTAGACATAGTACAAGAGAAAACGATCATGGAGTGGTTCCACAAGCCGTCGT 7233 ||||||||||||||||||| | ||||| || || |||||||| |||||||||| Sbjct 177373 TGTACGACCTAGACATAGTGGAGGAGAAGACCATTCTGGAGTGGGCGGCCAAGCCGTCGC 177432 Query 7234 GCAAGACTCTCAGCAA-AGAAGTGATGGCTGACGTGCACCGCCGCGCGCAGCCCTTCCTG 7292 | || | | || ||| | | |||||||| | |||||||||||||||||| Sbjct 177433 GGAAATATG-CGTCACGAGAGCTCGTCGCTGACGTCGTCAAGCGCGCGCAGCCCTTCCTG 177491 Query 7293 AACTGGCTGCAGCAAGCCGAGGATGA 7318 ||||||||||||| |||||||| || Sbjct 177492 GACTGGCTGCAGCAGGCCGAGGAGGA 177517 >seq2773 Length=85211 Score = 149 bits (164), Expect = 4e-31 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| || || || ||||| ||||| || ||||||||||| ||||||| Sbjct 66852 CATT-CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAAT 66794 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| ||| | || |||| ||||||||| ||||| || || || ||||| || | Sbjct 66793 CAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTG 66734 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||| |||||| ||||| || ||||||| | |||||| | || Sbjct 66733 GAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTT 66674 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || |||||||| || || |||| |||||||| || || ||||| Sbjct 66673 CAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| || ||||| || | |||||||| ||| |||||||| ||||| |||| Sbjct 66622 TACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAG 66563 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| |||| | || || | ||| || || ||||| || || ||||| || || | | Sbjct 66562 ACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAG 66503 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| ||||| ||| || || | || ||||||| || | Sbjct 66502 GGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTA 66443 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| || ||||| || | ||||| || || || ||||| Sbjct 66442 CTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| || ||||| || | |||||||| ||| |||||||||||||| | Sbjct 67308 CATT-CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGT 67250 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| || | || || | ||| ||||| ||||| || || || ||||| || | Sbjct 67249 CAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTG 67190 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||| || ||| ||||| || ||||||| | || || | || Sbjct 67189 GAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTT 67130 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || ||||| || || ||||| | |||||||| || || ||||| Sbjct 67129 CAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 116 bits (128), Expect = 2e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| || || || ||||| ||||| || ||||||||||| ||||||| Sbjct 66396 CATT-CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAAT 66338 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| ||| | || || | ||||| || || || || || || || ||||||| Sbjct 66337 CAGACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGG 66278 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| |||||| || ||||| | | ||||| | Sbjct 66277 GAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCT 66218 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || || || || ||||| || || | || ||||| ||||||||||| ||| Sbjct 66217 CAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTT 66162 >seq5513 Length=124375 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 74013 GACTGGCCTGCGAGTATGACACAAAAACCTTTGGAGCTTGCTGAGGCGGGATTTTATTAT 74072 || |||||| |||||| ||||| ||| |||||| || || || || || | || Sbjct 10827 GATTGGCCTCGCAGTATGCGCCAAAAGCCTGAGGAGCTAGCCGAAGCTGGTTTCTTCTAC 10768 Query 74073 ACGAATAAAGGCGACAGAACAAAGTGCTACTATTGTGACAATGGTTTAAAAGATTGGGAA 74132 || | |||| |||| ||| || |||| || |||||| |||||| || ||||||||| Sbjct 10767 ACTGGTCAAGGAGACAAAACGAAATGCTTCTTCTGTGACGGTGGTTTGAAGGATTGGGAA 10708 Query 74133 CCCGAAGATGTGCCCTGGGAACAACACGCTCGTTGGTTTGACAAATGTGAATTTGTTAAA 74192 || ||| | |||||||| ||||| || |||||||| || ||||| | || || Sbjct 10707 AATGACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCGATGTGCCTACGTCCAA 10648 Query 74193 ATTGTAAAAGG-CGATCAGTATGTGCAAAAGGTTATATCAGAAGCGTGTG 74241 |||| ||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 10647 CTTGTCAAAGGACGAG-AGTATGTTCAAAAGGTTATATCGGAAGCGTGTG 10599 >SEQ66911 Length=322 Score = 116 bits (128), Expect = 2e-21 Identities = 64/64 (100%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 263 Query 20020 CTTA 20023 |||| Sbjct 262 CTTA 259 >SEQ58356 Length=38410 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| ||||| || | |||||| | ||| | || |||||| ||||||||||| || Sbjct 35037 TTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCG 35096 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || || || | || || | ||||| || ||||| || | ||||| ||||| | Sbjct 35097 GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGT 35156 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | || ||||| || ||||||| || ||||| | | |||||| || Sbjct 35157 GGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCC 35216 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || ||||| ||||| | ||||||||||||||||||||| Sbjct 35217 ACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2744 Length=156805 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| | || |||||||| || ||| || ||||| || ||||| ||||| Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || || | ||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| |||||| ||| ||||| | | ||| ||| | ||| || Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| ||||||||||| || || | || || || || ||||||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq4618 Length=10119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| | || |||||||| || || || ||||| |||||||| || || Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || | || || || | ||| Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| |||||| ||| ||||| | | || ||| |||||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| || |||||||| || ||||| || ||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334673045612129