Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 610 8e-170 SEQ58105 96.9 4e-15 >SEQ17521 Length=26855 Score = 610 bits (676), Expect = 8e-170 Identities = 1210/1779 (68%), Gaps = 24/1779 (1%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||||||||| | |||| | |||||||| || ||| ||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || |||| |||||| || | ||| |||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 || | ||| | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 62080 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 || |||| | || ||||||||| || ||| || | ||| ||| || || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 ||||| | ||| || | | | || ||| |||| | ||||| | || || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 ||||||||| || ||||||| | ||| ||||| ||| | ||||| | || || Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 |||||| || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 62317 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 | || || ||||| | ||||| ||||| |||| |||||| ||| ||||| | Sbjct 3522 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 3465 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62433 || ||| | ||| || | || | | || | ||| |||| Sbjct 3464 GGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 3406 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 || | || ||| || ||||| |||| |||||| || || || || || |||||||| Sbjct 3405 TGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 3346 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAG--ATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || || |||| | |||| | ||| || || || ||| | || || Sbjct 3345 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCA--CTTTCATAAGGGTAG 3288 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | Sbjct 3287 CGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGC 3228 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 |||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| || Sbjct 3227 ATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGG 3168 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62728 ||| | || | ||| || || || | || ||||| | || |||| Sbjct 3167 TTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCA 3108 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 |||||||||| ||||| |||| ||| || | |||||| || ||||| |||| | Sbjct 3107 TTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGAT 3048 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | |||| || ||| || || || ||||||||||| || || ||||||| ||||| ||| Sbjct 3047 GTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGA 2988 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 ||||||||| ||||||| | ||| || || | ||||||||||| || ||||||| || Sbjct 2987 TTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGT 2928 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 | ||||| ||| || ||||| | ||| | || |||| | | || | |||||| | Sbjct 2927 GCTTCTACAATAGCCTTCCATAAAACTTGTGCTTTTACTT--GTTTAACAAATCTTTTTT 2870 Query 62969 CTTTCGTATAGTGTATACAATCG--TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | ||| ||| | | | || | ||| ||||| ||||||||| || ||| |||| Sbjct 2869 CATTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAG 2810 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 |||| |||| ||||||||||| ||| | | | | | | |||| ||||||||| | Sbjct 2809 GACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACA 2750 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 ||| || ||||| | ||| ||| | || || | || | ||| || || || |||| Sbjct 2749 AATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTAT 2690 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 ||||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| || | Sbjct 2689 TCTTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAA 2630 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | || || || ||||| || || ||||||| ||||| || ||| | ||||| |||| Sbjct 2629 ATGCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTC 2570 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | |||||||| | || ||||| ||| |||||| || || | ||| | | || | | Sbjct 2569 TTAACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAG 2510 Query 63327 CACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 | || ||| || ||| || || || || ||||| |||||| || || || ||| Sbjct 2509 CTCGGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACAT 2451 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| | || ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 2450 TGTTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAA 2391 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||| ||| | | ||| | ||| |||||| |||||| |||||||| || Sbjct 2390 GATGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAA 2331 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | || ||||| | || |||||| || | ||| ||||| || || || | ||| || Sbjct 2330 TACTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATA 2271 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || | || |||||||||| ||| || || ||||| ||| Sbjct 2270 CCAATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 >SEQ58105 Length=99015 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || |||||||| || | |||||| || || ||||| || || || ||| Sbjct 17281 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 17222 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTA 32838 || || ||||| || ||||| || | || | |||||| | || | | | || | Sbjct 17221 ATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCA 17162 Query 32839 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||| | | | ||||| || ||||||||||| |||||||||| || |||||||||||| Sbjct 17161 ATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 17102 Query 32898 AA 32899 || Sbjct 17101 AA 17100 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245 || ||||| | ||| || || |||| || || ||||| |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633100073856400