Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 219 5e-52 seq618 89.7 6e-13 >SEQ21942 Length=42535 Score = 219 bits (242), Expect = 5e-52 Identities = 349/498 (70%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 51942 CCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCG 52001 || |||| ||||| || ||||| || || || |||||||| || | ||| || |||||| Sbjct 35103 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCG 35044 Query 52002 AAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTC 52061 ||||| |||||||| | || || || || ||| | || || | | ||| | Sbjct 35043 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACC 34984 Query 52062 GCGTCGTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATC 52121 || | | |||| |||| ||||| | || ||||| || ||||| || || |||| | Sbjct 34983 TTATCATCAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACC 34924 Query 52122 TTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGA 52181 || || ||| | || |||| | |||||| ||||||||||| || ||||| || Sbjct 34923 TTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGT 34864 Query 52182 TCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATC 52241 |||||||||| || | || ||||| ||||| || | || ||||| || ||||| || Sbjct 34863 TCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATA 34804 Query 52242 GTCACCTTAAAGTCCGACCTGCCCAC-GCACGACCGTTGCAACGCTTCGAAACTGTTGTC 52300 | || || |||||| | |||| | ||| || |||||||| |||| |||||| || Sbjct 34803 GAAACTTTGAAGTCC-TCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTC 34745 Query 52301 GATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAG 52360 ||| ||||| |||||||| || ||||| || || || ||||| || || ||||| || Sbjct 34744 GATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAG 34685 Query 52361 CAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCC 52420 ||||| | || ||||| | || ||| |||||| || || || | |||||| || Sbjct 34684 AAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACC 34625 Query 52421 CCATTCGACAAAGTAGGC 52438 ||| || ||||| || || Sbjct 34624 CCACTCCACAAAATAAGC 34607 >seq618 Length=235165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 || ||||| ||| | || ||||| || |||| | ||||||||||||||||||||| Sbjct 145497 CATGGGTTCCACATCCATGAGTTTGGAGACAACACAAACGGTTGCACGTCGGCGGGGCCG 145438 Query 127604 CACTTCAATCCCACCGGTA--TGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTG 127661 ||||||||||| |||| | ||| ||||| || || |||| ||| | ||||| | Sbjct 145437 CACTTCAATCC--CCGGCAACAGGAGCACGGTGCCCCTGACGCATCCGTCAGACACGTAG 145380 Query 127662 GCGACCTGGGCAACGTGGAGGC 127683 | || ||||||||| | ||||| Sbjct 145379 GAGATCTGGGCAACATTGAGGC 145358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537151888833640