Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 179 4e-40 seq4842 134 2e-26 seq808 132 5e-26 seq762 132 5e-26 >SEQ58105 Length=99015 Score = 179 bits (198), Expect = 4e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 ||||| || |||||||| || ||||| || || ||||||||||| || ||||| ||||| Sbjct 16468 GAATCACGAATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATG 16409 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 || |||||||| || ||||| |||| || || || | || || ||||| ||||||| | Sbjct 16408 GCTATTTGGAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGC 16349 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || |||||||||||||| || ||||| ||||| |||||||| || | | || || Sbjct 16348 TCCACTAGATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTA 16289 Query 93533 ATAAAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGATC 93579 || |||||| ||||| || |||||| ||| |||||||| | || ||| Sbjct 16288 ATGAAATGTCTCTCACAATCCTTTAAACTT-TCCCAATCCGGTAAATC 16242 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| ||| || | |||||| ||||| || ||||| || | ||||| || ||||| Sbjct 17317 TCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTT 17258 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | |||||| || ||||||||||| || || ||||| ||||| || || ||||||||||| Sbjct 17257 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCT 17198 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 ||||||||||| |||| |||| | || || ||||||| || ||||| || || Sbjct 17197 ACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTGCC 17138 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || || |||| |||||| | ||||| ||||| ||||||| | |||| Sbjct 17137 TTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAAGAAATC 17091 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| | ||| |||||||| ||||||||||| || ||||| |||||||||||||| ||| Sbjct 16168 TTTGATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACATTTCC 16109 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || ||| |||| || || |||||||| ||||| | | ||||||||| |||||| Sbjct 16108 CAAATATCTGGATACTGGATAGGAAATATAACAAATCTACGAGGGTTATCCCTTAGTAGG 16049 Query 93701 GGCTCTAGTTGTGGGTCAAAC 93721 || |||| ||||||||||||| Sbjct 16048 GGTTCTAATTGTGGGTCAAAC 16028 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 |||||| || |||| ||| || ||||| ||||| ||||| || ||||| | ||||| Sbjct 17889 CTTTTCTCCAATCAGCTCAACCAGCAATCTGTCAGCAACAAACTCAATGTAATCTGACAT 17830 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 || ||||| ||||| ||||| || | || ||||||||||| || ||||| || | ||| Sbjct 17829 CAGTTCACAGTTCATGCCTAGCAGTCTCACGGGTAGAGCGTCAGTTAAGAACTCCTGCTC 17770 Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGAC 93075 || || || || ||||| | || || ||||| || ||||||||| || | Sbjct 17769 TATGACCACAGCGTCTTTGATAATACTTAGAACTCTTTGTTTACTTGGTTTTTGAACTAA 17710 Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 || ||| ||||||| || |||||||| || || | ||| Sbjct 17709 ATGCTTGAACATTAAACAAGCAAAGTCAGTGTGGAGACC 17671 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 |||| || || ||||| | |||||| ||||| || |||| | ||| || || | Sbjct 18325 ATTAAAACTCAGCATCCAATGTAAACACATTATCCTCAGGATC---AGCCATTACTCCCC 18269 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 |||| |||||||| || ||||| || ||||||||||| ||||||||||| ||||| || Sbjct 18268 ATTTCTGGTATTCACCTACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAAGAGATGA 18209 Query 92861 AATTCA-CTAGT-GATTGGATTCTTGGCGTTATAATACT 92897 |||| ||| | ||||||||| | ||| |||| || Sbjct 18208 GGTTCATAAAGTCAAATGGATTCTTTGTGTTGTAATGCT 18170 >seq4842 Length=149527 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 15233 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 15292 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 15293 GTGGGTTCGAACCCCACACCTGACAAAT 15320 >seq808 Length=702611 Score = 132 bits (146), Expect = 5e-26 Identities = 86/92 (93%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 126260 TTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCG 126317 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 375302 TTTA-AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAG 375360 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||||||| Sbjct 375361 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 375392 Score = 132 bits (146), Expect = 5e-26 Identities = 87/95 (92%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 419457 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 419516 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| ||| || Sbjct 419517 GTGGGTTCGAACCCCACACCTGACAAAACATTCTT 419551 >seq762 Length=140812 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 43041 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 43100 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 43101 GTGGGTTCGAACCCCACACCTGACAAA 43127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556393322319160