Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq5513 123 2e-23 seq2773 93.3 4e-14 >seq5513 Length=124375 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 105432 TCCGAGTCTGCACGTTTAAAAACTTTTGAGGATTGGCCACTTAGTTTAAAACAAAGGCCA 105491 ||||| |||| ||| | || |||| |||||||| | ||| | |||| ||| Sbjct 10857 TCCGAAGCTGCCCGTCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGCCAAAAGCCT 10798 Query 105492 GAGCAATTGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGTCAAATGTTTT 105551 ||| | | |||||||| ||||| | |||||| || |||| || ||| ||||| || Sbjct 10797 GAGGAGCTAGCCGAAGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTC 10738 Query 105552 TATTGCGACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGAGGAACATGCA 105611 | || ||||| || | |||||||||| ||| | ||| || |||||| |||||||| Sbjct 10737 TTCTGTGACGGTGGTTTGAAGGATTGGGAAAATGACGATATTCCCTGGGAGCAACATGCA 10678 Query 105612 CGTTGGTTTGATCGCTGTTCGTTCGTAAAACTGGTCAAAGGACACGACTACGTGCA 105667 |||||||| ||||| ||| | | ||| |||| |||||||||| || || || || Sbjct 10677 CGTTGGTTCGATCGATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTTCA 10622 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 ||||| ||||||||| | || || | || |||||||||||||| ||||||||||| ||| Sbjct 11118 AACGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAA 11059 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| | ||| |||| |||||||| || || ||||| ||| || | ||||| || || Sbjct 11058 ATCATGAGATGGGTGGAAGGCGACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAA 10999 Query 105282 TGCCCGTT 105289 || ||||| Sbjct 10998 TGTCCGTT 10991 >seq2773 Length=85211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 167/241 (69%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || |||||||| || | || || || |||||||| ||||| ||||| Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | || ||| ||||| ||||| |||||| | || || || Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 111363 ||| | || || | ||| || |||||| |||||||| | || |||| | || || Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTAT--CTGACTAC 67482 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAATA 111422 || || ||||||||||| || | || ||||| || ||||| || || ||||| |||||| Sbjct 67483 AACATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGGCAATTAAATA 67542 Query 111423 A 111423 | Sbjct 67543 A 67543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| | || || || || |||||| | ||| || || Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || | | | ||||| ||||| |||||||||||| | || || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| |||| |||| ||| ||||| ||| |||||||| || || | || || || Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAA 66572 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| ||||| || || | || |||||||||| ||||| Sbjct 66573 CATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGG 66620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || ||||| |||||||| ||||| ||||| Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| || || |||||| | || || ||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| || || ||| |||||||| ||| || | || || ||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || || | || |||||||||| ||||| Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 67304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| ||||| || ||||| ||||| ||||| Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| ||||| |||||| | || || ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || |||||| | |||||| || || | ||||| || Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || || || || || || | || ||||| Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422693741627800