Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2110 95.1 2e-14 seq1994 95.1 2e-14 seq3822 93.3 9e-14 seq5064 91.5 3e-13 seq4611 91.5 3e-13 seq4020 91.5 3e-13 seq3330 91.5 3e-13 seq2050 91.5 3e-13 seq1449 91.5 3e-13 seq1444 89.7 1e-12 seq923 89.7 1e-12 >seq2110 Length=216198 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 84664 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 84723 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 84724 AGCCCCACGTTGGGC 84738 >seq1994 Length=811721 Score = 95.1 bits (104), Expect = 2e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 142045 AAACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGG 142104 ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||| | || Sbjct 43309 AAACGCA-GTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGG 43367 Query 142105 GTTCGACCCCCGCCAGAGACGC 142126 |||||| |||| |||| || || Sbjct 43368 GTTCGATCCCCACCAGGGATGC 43389 >seq3822 Length=213635 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 142494 TGGTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCG 142552 |||| | ||| |||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct 28919 TGGTAACATAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCG 28860 Query 142553 TGGGTTCGAGCCCCACATCGGGC 142575 |||||||||||||||| | |||| Sbjct 28859 TGGGTTCGAGCCCCACGTTGGGC 28837 >seq5064 Length=168232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 160838 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 160897 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 160898 CCCCACGTTGGGC 160910 >seq4611 Length=51627 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3022 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2963 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2962 CCCCACGTTGGGC 2950 >seq4020 Length=121956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 83069 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 83128 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 83129 CCCCACGTTGGGC 83141 >seq3330 Length=389487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 37561 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 37502 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 37501 CCCCACGTTGGGC 37489 >seq2050 Length=647506 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 483200 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 483259 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 483260 CCCCACGTTGGGC 483272 >seq1449 Length=656447 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 578246 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 578305 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 578306 CCCCACGTTGGGC 578318 >seq1444 Length=92764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1878 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1819 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1818 CCCACGTTGGGC 1807 >seq923 Length=212168 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 35786 TGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGAT 35845 Query 142112 CCCCGCCAGAGA 142123 |||| |||| || Sbjct 35846 CCCCACCAGGGA 35857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026952372450719