Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2773 187 5e-42 seq4618 185 2e-41 seq2744 159 6e-34 SEQ37497 150 3e-31 SEQ58356 118 2e-21 seq2591 96.9 6e-15 seq3747 86.0 1e-11 >seq2773 Length=85211 Score = 187 bits (206), Expect = 5e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||||| ||||| || || || ||||| ||||| | ||||| |||||||| ||||| | Sbjct 67540 TTTAATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGT 67481 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | ||||||||| | || || || || || ||||||| ||||||| Sbjct 67480 AGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGT 67421 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || |||||||||||||| || || || || ||||| ||| || || |||| | Sbjct 67420 CTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAG 67361 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||| || ||||| ||||| || || |||||||| || ||||||||| Sbjct 67360 GTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || | ||| ||||||||||| ||||| || || ||||| ||||| ||||| | Sbjct 66394 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66335 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||||| | ||||||||| | ||| ||||| ||||| || || | || || ||||| | Sbjct 66334 ACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAG 66275 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| ||||| ||||| || || || || || || || || | || || | Sbjct 66274 GGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||| ||||||||||| ||||| ||||| || |||||||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATT 66165 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || | ||| ||||||||||| ||||| || || ||||| ||||| ||||| | Sbjct 66850 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66791 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||||| | ||||||||||| || || || || || ||||||| |||||||| || | Sbjct 66790 ACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 66731 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||| || || || || || || ||| || || |||| | ||| | Sbjct 66730 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66671 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || || || || || || || || || || || || ||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||||||||| ||||| || || ||| Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||||| || || || || |||| |||||||| || || Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || || || || ||| || || |||| | ||| ||| Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66897 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || ||||| ||||| || || |||||||| || || |||||| Sbjct 66896 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || || ||||||||||| ||||| || || || Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || ||||| | ||| ||||| || || Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| || || ||||| ||| ||||| || |||| || |||||| Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || || ||||| || || || || || |||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || |||| ||| | ||| || || ||||||||||| || || || || | Sbjct 67306 TTCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAG 67247 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | ||||| || || || || |||| |||||||| || | Sbjct 67246 ACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAG 67187 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||| || || || || || ||||| ||| || ||||| | | ||| | Sbjct 67186 GGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAA 67127 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || ||||| || ||||| || || || || || || ||||| Sbjct 67126 CTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 >seq4618 Length=10119 Score = 185 bits (204), Expect = 2e-41 Identities = 193/252 (77%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 68210 TTTTGCTATGATGTGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGA 68269 |||| |||| |||| | |||||| || || | | | || |||||| || || ||||| Sbjct 680 TTTTTCTAT-ATGTACTATTAATTGCCACCCCTCAATCTCAGTACCAAATGGAGTGTGGA 622 Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 ||||||||||| || || || |||||||| | |||||||| | |||||| ||||| || Sbjct 621 TTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 562 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 ||||| || || ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 561 GATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATT 502 Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||||||||||| || || ||||| | ||||| ||||| || || | ||||||||| Sbjct 501 TTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGAC 442 Query 68450 GAATATCTGCAT 68461 ||| || ||||| Sbjct 441 GAAAATTTGCAT 430 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || |||||| || || || || ||||||||||| || || || |||||||| | ||||| Sbjct 414 CAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATC 355 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | ||| || || || || ||||| || || ||||| ||||| || || || ||||| Sbjct 354 TTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTC 295 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || ||||| || || |||||||||| || || ||||| | |||||||| Sbjct 294 TTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGT 235 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || | |||||||||||| || ||||| Sbjct 234 TTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 138 bits (152), Expect = 2e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || |||||| || || ||||| ||||| ||||| || || || |||||||| | ||||| Sbjct 186 CAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCCATC 127 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| ||||| || ||||| || || ||||| || || || || || ||||| Sbjct 126 TTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTTGTC 67 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| || || ||||| || || |||||||||| || || ||||| | |||||||| Sbjct 66 TTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGT 7 Query 68429 TTTTCC 68434 ||| || Sbjct 6 TTTGCC 1 >seq2744 Length=156805 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || |||||| || || ||||| |||||||||||||| || || |||||||| | ||||| Sbjct 156782 CAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACCATC 156723 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| || || || || || || || ||||| || || || || || ||||| Sbjct 156722 TTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTTGTC 156663 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || ||||| || || || ||||||| | |||||| || | ||| || || Sbjct 156662 TTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAATAGT 156603 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || ||||| ||||| || || |||||||| Sbjct 156602 TTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >SEQ37497 Length=345 Score = 150 bits (166), Expect = 3e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||| || || || |||||||| | |||||||| | ||| || ||||| || ||| Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || || || ||||| ||||| || || || ||||||||||| || ||||| || || Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||||| || || ||||| | ||||||||||| || || | |||||||||||| Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 68454 ATCTGCAT 68461 || ||||| Sbjct 165 ATTTGCAT 158 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || |||||| || || ||||| ||||||||||| || || || |||||||| | ||||| Sbjct 142 CAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTACGACCATC 83 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| ||||| || ||||| || || ||||| ||||| || || || ||||| Sbjct 82 TTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTC 23 Query 68369 TTGAATCTTTGCCTTGAC 68386 ||| || || ||||| || Sbjct 22 TTGTATTTTGGCCTTAAC 5 >SEQ58356 Length=38410 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || ||||| || || || || || ||||| | ||| | |||||||| | ||| || || Sbjct 35070 GTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCA 35129 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | | ||| || || |||||||| || || || |||||||| ||||| || Sbjct 35130 GCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTATCTTGAATTTTTGCTTTT 35189 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || || || || | | || || || | |||||||||||| ||||| ||||| Sbjct 35190 ACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTT 35249 Query 68445 TTGACGAATATCTGCATT 68462 || ||||||||||||||| Sbjct 35250 TTCACGAATATCTGCATT 35267 >seq2591 Length=330536 Score = 96.9 bits (106), Expect = 6e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 268268 TCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGG 268327 || ||||| ||| ||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 319828 TCAACATAATCCTTAGCATGTCCCCAGTCTCGCTTACTGTCCAGATTCCCCAGCTCCAGC 319887 Query 268328 CATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAAC 268387 | | || || |||| | ||| | | | || || || |||| || ||||| Sbjct 319888 ACATCCAGCAGCCCAAGCTGTATCTTTGCCACAGCACGCGTAATCTTTCTTGTGACGAAG 319947 Query 268388 GTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCA 268447 ||||||| || | || |||||||||||||| || | ||||||||| ||||||||| | Sbjct 319948 TTCTCGCCCCGCCGCGGACTCTCGTGGTTGAACAGCACGCCGTTGCAAGCGAACATGTCG 320007 Query 268448 TATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 || || || | ||||||||| || |||| ||| Sbjct 320008 TACGCTTCCCTGTAGTTCACTACTATCCAATAT 320040 >seq3747 Length=111519 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || || || || || || || ||||| ||||||||||| || ||||| ||||| Sbjct 105186 CTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTTTCGATT 105127 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | | ||| || || | |||||||| || ||||| |||||||| || || ||| Sbjct 105126 GTGTCAGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAAATC 105067 Query 68457 TGCAT 68461 ||||| Sbjct 105066 TGCAT 105062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920848709515480