Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 244 8e-60 seq2773 136 3e-27 SEQ58356 91.5 1e-13 seq4618 91.5 1e-13 seq2744 86.0 4e-12 >SEQ21942 Length=42535 Score = 244 bits (270), Expect = 8e-60 Identities = 349/489 (71%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 || || || ||||| || || || || |||||||| ||||| ||||||||||| |||||| Sbjct 35094 GGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTC 35035 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGC 84356 || ||| | || || || || || |||||| | ||||||| | || | Sbjct 35034 CAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCA 34975 Query 84357 ATGAAATAAAACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGC 84416 | ||| || || || || | ||| ||||| || || || || ||||||| ||| || | Sbjct 34974 AAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCA 34915 Query 84417 GGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAA 84476 || | || ||| | ||||| ||||||||| |||||||| || ||||||||||| Sbjct 34914 GGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAG 34855 Query 84477 GCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTA 84536 | ||||| ||||| || || ||||||| || ||||| || |||||||| | || ||| Sbjct 34854 GAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTG 34795 Query 84537 AAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTG 84596 || ||| | || || ||||| |||||||||| || || |||||| || || |||| Sbjct 34794 AAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTC 34735 Query 84597 AGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAG-TGTGA 84655 | | ||||| ||||| | |||||| || ||||| || || ||||| || ||| |||| Sbjct 34734 AAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTA-AAGAAGATGTGT 34676 Query 84656 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAAC 84715 | ||| || | ||| || || ||||| || || || | ||| || ||||| || || Sbjct 34675 AAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCAC 34616 Query 84716 AAAATACGC 84724 |||||| || Sbjct 34615 AAAATAAGC 34607 >seq2773 Length=85211 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||| || ||||| ||||| ||| | || Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| ||||| || || || || | ||| | ||||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||| ||||||||||| ||||||||||||||| || || | |||||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||||||||| ||||| |||||||||| |||||||| ||| Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGA 66849 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| |||||||||| |||||||| ||||| ||| | | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| ||||| || || | ||| | ||||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||||||||||||||| || ||||| |||||| ||| || | || |||||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || || || |||||||| | ||| | ||| | ||||| ||| Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGGA 67305 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| |||||| | || ||| | || || |||||||| ||| |||| || | Sbjct 66163 AAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCA 66222 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | || |||||| || ||||| ||| | ||| | Sbjct 66223 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGAT 66282 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | |||||||| || || ||||| || |||||| || || | |||||| Sbjct 66283 CAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTAC 66342 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| ||||||||||| ||||| |||||||||| |||||||| ||| Sbjct 66343 AACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGA 66393 Score = 100 bits (110), Expect = 2e-16 Identities = 174/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || || |||||||| ||||| ||| | | Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | || ||||| || || || || | ||| | |||| Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| |||| ||||||||||| |||||||| |||||| ||| | | || ||||| Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAA 67484 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATA 22072 ||||| || ||||| ||| | || | ||||||||| | |||||||| |||| |||| Sbjct 67485 CATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGGCAATTA--AATA 67542 Query 22073 AAAACCATAAAT 22084 | |||| | ||| Sbjct 67543 ATAACCTTGAAT 67554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || || |||||||| ||||| ||| | | Sbjct 66849 AATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTC 66908 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| ||||| || || || || | ||| | |||| Sbjct 66909 AGATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 66968 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| |||||||||||||||| || ||||| |||||| ||| | | || ||||| Sbjct 66969 ACAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAA 67028 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || || || |||||||| | || | ||| | ||||| || Sbjct 67029 CATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGG 67076 >SEQ58356 Length=38410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | ||||| | ||||| |||||||| ||| | || ||| ||| | Sbjct 35267 AATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTC 35208 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||||| |||||||||||| | || | || Sbjct 35207 CGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCA 35148 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | | ||||||||||| ||||| || |||||| || | |||| ||||| Sbjct 35147 GCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAA 35088 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||| ||||| | ||| | || || | ||| ||||||| Sbjct 35087 TATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGG 35040 >seq4618 Length=10119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || ||||||||||| || | ||| || | || Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || ||||||||| | || | |||| Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| |||||||| || |||||| || | | || |||||| Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 381 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 || || || |||||||| || ||| ||||| Sbjct 382 ATCCAAAAAGAATCTACACTCCATTTGGTA 411 >seq2744 Length=156805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || ||| | || ||| | || |||||||| |||||| | || ||| | Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 |||| || | | || | ||| |||||| || ||||||||| | || | || Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATT 22008 || ||||| |||||||||||||| || || || |||||| | | ||| | | || | Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCT--CTGACT 156744 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 |||| || || || ||||| || || ||| ||||| Sbjct 156745 ACAACATCCAAAAAGAATCCACACTCCATTTGGTA 156779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357831674739286