Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq958 298 1e-77 >seq958 Length=64763 Score = 298 bits (330), Expect = 1e-77 Identities = 391/538 (73%), Gaps = 40/538 (7%) Strand=Plus/Plus Query 991 CTGCGCTTATAAGTATCATCACACTCTAGTACTCCTGTTGAAAAAATAACTTGGATTCTA 1050 ||| ||||||| ||||||||| ||| | ||||| |||||| ||||||||||| |||||| Sbjct 6294 CTGTGCTTATAGGTATCATCATACTTTTGTACTTCTGTTGGAAAAATAACTTCAATTCTA 6353 Query 1051 GCACTAGTGGGTCTTGTATGAATGCCCGCTATGAATGCTGCGCCGTAGTCCAGCGTCATG 1110 || |||||| ||| || || |||||||||| | | ||||| | |||| | || |||| Sbjct 6354 GCTGTAGTGGCTCT--TACGAGTGCCCGCTAT-AGCGGTGCGCTGCAGTCAAACGCCATG 6410 Query 1111 CTCACATAATGCAAACGCAGATAAAGCGCTGTATATGGCCTACGAGATGCGGGTGACCGC 1170 || || ||||||| | | ||| || || ||||||| ||||||||||| ||||||| Sbjct 6411 CTTTTATTATGCAAAGGTTG--CAAG-GCGGTGTATGGCCAACGAGATGCGGCTGACCGC 6467 Query 1171 TGCATGTCAACGAT--AAGCAGATGATTCTACAAGAAGTATGTTTGCTCTAACCGTTTCA 1228 ||||||||||| || ||||||| |||||||| |||||||||| | |||| ||| Sbjct 6468 TGCATGTCAACAATTGAAGCAGAGCATTCTACATGAAGTATGTTCGTTCTAGACGT---- 6523 Query 1229 AATGTCATTCTCTTTCTGTGAGAACGTGAGCTGTAGGTTTCTGATCATTCGGTCCCAGCT 1288 | | | || ||| ||| || |||||| |||||||||||| |||||| |||| Sbjct 6524 --ACTAAGTATCGTTCAGTGGTAATATGAGCTATAGGTTTCTGATAATTCGGCTTTAGCT 6581 Query 1289 CGGATGCTGATGCTGCGGCCCTAGCCATGAAAGTTCCCTGCTGGGTTTGGAACCATATGT 1348 |||||||||| | ||||| || | || ||| || |||| ||| | |||| Sbjct 6582 TGGATGCTGATAGTACGGCCTTACCAATTCGTGTTACCAGCTGCTTTT--ACCCAT---- 6635 Query 1349 TAATTCATCGCATCTTCAAGGGGGCACATACAAAACAAGTAGATATTTTTTAAA------ 1402 |||||| ||| |||||||||||||||| ||||||| || | ||||| ||| Sbjct 6636 --ATTCATAGCACCTTCAAGGGGGCACATCCAAAACAGGTCAAAATTTTCGAAAATGCAT 6693 Query 1403 ---------ATGCATTATAATATCTTCATCAGCGAATACGAAAATATCATCCTTGGGTTG 1453 |||||||||| ||||||||||| |||| ||||||| ||| |||| | Sbjct 6694 CTGACCACTATGCATTATAGTATCTTCATCACTGAATCCGAAAATGTCACACTTGCCCCG 6753 Query 1454 CCTAGACGCTTAATTTCAAAGTTATTATAGTCCATACGCTATCGTGTCACTGACTGTA 1511 ||| | || ||| || ||| |||||| |||||||||| ||| |||||| |||| Sbjct 6754 ACTAAATGCCTAACTTTGAAG---TTATAGACCATACGCTAATGTGCCACTGATTGTA 6808 Score = 194 bits (214), Expect = 3e-46 Identities = 153/181 (85%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 2444 ATGCATCCTAGTCGTATGTAAAAATCTGTAAAAGTATTCGATCTCaaaaataaaaaa--C 2501 || ||||||||||||||||| | | ||||| |||||| | ||| |||||||||||| | Sbjct 2988 ATACATCCTAGTCGTATGTATGATT-TGTAATAGTATTAGTTCTTAAAAATAAAAAAAAC 3046 Query 2502 TTGTTCCTAGCTCATACATATTTATTTTATTTCAAAGTGCATGTTAGCTTAGCAACGACT 2561 |||| ||| |||||||| |||||| |||||||||||||||||| ||||||||||| | Sbjct 3047 TTGTCCCT----CATACATAATTATTTCATTTCAAAGTGCATGTTACCTTAGCAACGAAT 3102 Query 2562 GCCAAGCTTGCGTGTACCTTCTTACAAATGTCACGACACACCGGTTTCTTTCACAATACT 2621 |||||||||| ||||||| ||||||||||||||||||| || ||||| |||| ||||| Sbjct 3103 ACCAAGCTTGCCTGTACCTCCTTACAAATGTCACGACACGCCAGTTTCCTTCATGATACT 3162 Query 2622 A 2622 | Sbjct 3163 A 3163 Score = 174 bits (192), Expect = 3e-40 Identities = 149/182 (82%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 2444 ATGCATCCTAGTCGTATGTAAAAATCTGTAAAAGTATTCGATCTCaaaaataaaaaa--- 2500 || ||||||||||||||| || || ||||| |||||| | ||| |||||||||||| Sbjct 3753 ATACATCCTAGTCGTATG-AATGATTTGTAATAGTATTAGTTCTTAAAAATAAAAAAAAA 3811 Query 2501 CTTGTTCCTAGCTCATACATATTTATTTTATTTCAAAGTGCATGTTAGCTTAGCAACGAC 2560 ||||| ||| |||||||| |||||| |||||||||||||||||| |||||||| || Sbjct 3812 CTTGTCCCT----CATACATAATTATTTCATTTCAAAGTGCATGTTACCTTAGCAAAGAA 3867 Query 2561 TGCCAAGCTTGCGTGTACCTTCTTACAAATGTCACGACACACCGGTTTCTTTCACAATAC 2620 | ||||||||| |||| ||| |||| ||||||| ||||| || ||||| |||| ||||| Sbjct 3868 TACCAAGCTTGTGTGTTCCTCTTTACCAATGTCATGACACGCCAGTTTCCTTCATAATAC 3927 Query 2621 TA 2622 || Sbjct 3928 TA 3929 Score = 170 bits (188), Expect = 3e-39 Identities = 180/237 (76%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 1666 GCAAGACTCCATGCATGCCCAGCATGCTGGGCTATTTGCAGTTAGAGTTTAAACAATCTT 1725 |||||||||||| ||||| || |||||| |||||||||||| ||||||||||| Sbjct 1241 GCAAGACTCCATACATGCTCAACATGCT--------TGCAGTTAGAGTGTAAACAATCTT 1292 Query 1726 CGGTTGCCTT-GTACCACGAGGTGCACCTCCTGAAGATTACCTATATTTGTTCCATACGG 1784 ||||| || ||||| | | |||||| ||||||||||| ||||||| | | ||||| Sbjct 1293 AAGTTGCATTTGTACCGTAACGAGCACCTTCTGAAGATTACATATATTTTTGTCTTACGG 1352 Query 1785 AGCATGATTGCTCACGCTAACAGGAAAGTTAACACAGTCTGTGGTATCACTCCTGAAATG 1844 ||| ||||||| || ||||| ||| ||||||| |||||| | ||||| || || || Sbjct 1353 AGCCTGATTGCGCAAGCTAATAGGGAAGTTAATACAGTCGACGATATCATGCCCGACATA 1412 Query 1845 AACGCTGAAACTCCATACATTATCCTCATCATTTTCCGTTTGTGGTTGAAAATGATT 1901 || | ||||| || ||||||||||| |||||| | ||| | | |||||| ||| Sbjct 1413 AAGTATAAAACTGTATGCATTATCCTCACCATTTTTCCTTTTTAATCGAAAATAATT 1469 Score = 165 bits (182), Expect = 1e-37 Identities = 148/185 (80%), Gaps = 18/185 (10%) Strand=Plus/Plus Query 2444 ATGCATCCTAGTCGTATGTAAAA--ATCTGTAAAAGTATTCGATCT----Caaaaataaa 2497 ||||||||| | ||||||| | || ||||| |||||| | ||| |||||||||| Sbjct 2048 ATGCATCCTGTTTGTATGTATGATGATTTGTAATAGTATTTGTTCTTTCTCAAAAATAAA 2107 Query 2498 aaaCTTGTTCCTAGCTCATACATATTTATTTTATTTCAAAGTGCATGTTAGCTTAGCAAC 2557 |||||||||||| |||||||| |||||| |||||||||||||||| ||| | ||||| Sbjct 2108 AAACTTGTTCCT----CATACATAATTATTTCATTTCAAAGTGCATGTCAGCATTGCAAC 2163 Query 2558 GACTGCCAAGCTTGCGTGTACCTTCTTACAAATGTCACGACACACCGGTTTCTTTCACAA 2617 || | ||||||||||||| |||||||||||||||||||||||||| |||| | Sbjct 2164 GAATACCAAGCTTGCGTG--------TACAAATGTCACGACACACCGGTTTCCTTCATGA 2215 Query 2618 TACTA 2622 ||||| Sbjct 2216 TACTA 2220 Score = 159 bits (176), Expect = 6e-36 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 2082 ATTACGTAGGTTTCAAAATAGTATAAATTGCGGAAA-GACCTATACCATTGATCATTGGC 2140 |||| |||||||| | | ||| ||| | |||| || || ||| || |||||| || Sbjct 1574 ATTAGGTAGGTTTTGAGTAAATATGAATCGAAGAAACGAACTGTACAATCAATCATTAGC 1633 Query 2141 ACATATACCGTTGACATATTCACAAGGAGCTATACAAGCAATCAGCACAAGCACTCTCGA 2200 ||||| ||| | |||||| |||| ||||||||| || ||||||||||| || |||| Sbjct 1634 ACATAGACCCTCGACATAATCACCGGGAGCTATAAAATCAATCAGCACATATACCTTCGA 1693 Query 2201 CAAAATCACCATGTGGGGAAACAATAGCGGAAATTCTGGAGAAGCCGCACGTCGGGACGC 2260 || ||| | ||||| |||||||||||| | |||||||| ||||||||| ||||| ||| Sbjct 1694 CACAATAAACATGTCGGGAAACAATAGTGAAAATTCTGAAGAAGCCGCTCGTCGAGACAT 1753 Query 2261 CGAGGAAAGACGTCGCAAAGAGCAA 2285 || ||||||||| | ||||||||| Sbjct 1754 CGTCGAAAGACGTTGGAAAGAGCAA 1778 Score = 136 bits (150), Expect = 7e-29 Identities = 135/173 (78%), Gaps = 10/173 (6%) Strand=Plus/Plus Query 446 GATAAAATTTTCGCTACCA-TTCGCTACAATTGTACAATGTACTAACAACGTTTAATTAC 504 ||||| |||| ||||||| |||| |||| |||| ||| |||||| |||| Sbjct 5881 GATAACATTTATGCTACCAATTCGGTACA-TTGTT--------TAAAAACGTTCAATTGT 5931 Query 505 TGTACTAGATGCATTGTCGTAACTCGTCAATTCATAATAGGAATGCTGGACACTCATCGT 564 || ||| |||||||| || || |||| || | | |||||||||||| ||| |||||| || Sbjct 5932 TGAACTGGATGCATTTTCTTAGCTCGCCAGTCCGTAATAGGAATGCGGGATACTCATAGT 5991 Query 565 GAAAAACAGTTCAAAAGTTTGTACATTCAGTATACAGGTAAAACATATCTATT 617 ||| | |||||| ||||||| ||| || ||||||||||||||||||| ||||| Sbjct 5992 GAAGACCAGTTCTAAAGTTTATACCTTTAGTATACAGGTAAAACATACCTATT 6044 Score = 122 bits (134), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 48 TGCATAGAGTACCGGGGCCACTACACTGCCTAACACGATTGTAGGTGCACCGTGACATGC 107 |||||| | | || || ||| ||||| |||||||||||||| ||| ||||| |||| Sbjct 4013 TGCATAAATAAACGTGGTCACCACACTTTGTAACACGATTGTAGCAGCAGCGTGATATGC 4072 Query 108 TATGCAGTGGTAGGTAGGT-TAGTGCACGTTACATAGAGTTTCTAGGTAA---CTCTGTC 163 ||||||| | ||||||||| ||||||||||||||| | |||||||||| |||||| Sbjct 4073 TATGCAGCGATAGGTAGGTACGGTGCACGTTACATAGTGGTTCTAGGTAAGGTATCTGTC 4132 Query 164 ATACTATAGTCTTAACAT 181 ||||||||| | |||||| Sbjct 4133 ATACTATAGACCTAACAT 4150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700986852274