Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008950.1 Length=5254 Score E Sequences producing significant alignments: (Bits) Value seq1360 96.9 1e-16 >seq1360 Length=330242 Score = 96.9 bits (106), Expect = 1e-16 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 1531 AAGATTGCATAAAAGAAAACACAGAACCATTGATCGATTACTTCTGTTCGACACTTCATT 1590 ||||||||| |||||| | | ||| | | |||||||||| | | || ||| Sbjct 314224 AAGATTGCAAAAAAGATCGGAAAAAACTTCTCGTTGATTACTTCTACACAAATCTACATA 314283 Query 1591 CGCACAACAGTTATGCCTACAAATATTTTTTCTGTGAAATGTTGAATTTCATTAACGCCG 1650 | || ||| ||| || | || || |||| | |||||| ||||||||||||| || | || Sbjct 314284 CTCAGAACTTTTACGCGTTCAGATTTTTTATATGTGAAGTGTTGAATTTCATCAATGTCG 314343 Query 1651 TGGGACAAATATGTTTCATGAATGTCTTTATCGGTGAAGACTTTGTGTAC-TACGGAATT 1709 | || ||||| | ||||||| || |||| | | || || || | || |||||| Sbjct 314344 TAGGTCAAATCTATTTCATGGATTTCTTCCTGGATGGTGA-ATTCTCAACATACGGACGA 314402 Query 1710 GATATCATAATGTTTAACCGAGAACAGATAGTCGGAATGAC----AGACCCTATGGAACG 1765 ||| |||| | | ||||| || | || | ||| || |||||| |||| | | Sbjct 314403 GATGTCAT-CCGCTATACCGA-AATGG--AGCCAGAAGAACGAGAAGACCCAATGGCAAG 314458 Query 1766 ACTATTCCCAGTGATGACCAAGTGTACTTATCAAACGTTCGGACCTTCTGGGACTCTTGA 1825 | | ||||| | ||||| || |||| || | | ||| || || |||||| || | Sbjct 314459 AGTGTTCCCTAAAGTTACCAAATGCACTTTCCACAAATACGGTCCATCAGGGACTGTTCA 314518 Query 1826 GAATTTGGAAGGAATGTGCACCCTGACACAGAACGCGCTAAATGCAAGAATTTATGCATT 1885 ||| || || || |||| | || | | |||| | |||| || ||| |||| || Sbjct 314519 GAAGTTTGACGGTCTGTGTGTCTTGCCGCTGAACATCGTCAATGAAAAAATCTATGTGTT 314578 Query 1886 TTTATGGTTTTGGTTT 1901 |||||||||||||| Sbjct 314579 CCTATGGTTTTGGTTT 314594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16688532401265