Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008973.1 Length=4180 Score E Sequences producing significant alignments: (Bits) Value seq958 513 4e-142 >seq958 Length=64763 Score = 513 bits (568), Expect = 4e-142 Identities = 488/616 (79%), Gaps = 11/616 (2%) Strand=Plus/Minus Query 953 TACAGTCAGTGACATGAGAGCGTATGGTCCATAACTTTAAAATTAAGCATCTAGGCAAGG 1012 |||| |||||| || ||||||||||| ||||||| ||| ||| |||| ||| | || Sbjct 6808 TACAATCAGTGGCACATTAGCGTATGGTCTATAACTTCAAAGTTAGGCATTTAGTCGGGG 6749 Query 1013 CAAGGGTGATGTATTCGTATTCAGTGATGACGATATTATAGTGCATAGAGGTCAGATGCA 1072 |||| |||| | |||| |||||||||||| |||| |||| ||||||| ||||||||||| Sbjct 6748 CAAGTGTGACATTTTCGGATTCAGTGATGAAGATACTATAATGCATAGTGGTCAGATGCA 6689 Query 1073 TTTGCAAAAATTTCTACCTGTTTTGCATGTGACACCTTGAAGGTGCTATGAATATGAGTA 1132 ||| | ||||||| |||||||||| ||||| | |||||||||||||||||||||| ||| Sbjct 6688 TTTTCGAAAATTTTGACCTGTTTTGGATGTGCCCCCTTGAAGGTGCTATGAATATGGGTA 6629 Query 1133 AAAGCAGCAGGTAACGTGAACTGCTAACGGCCGTGGCATCAGCGTCCAAGCTGGGGACGA 1192 |||||||| |||||| ||| || ||| |||||| |||||| |||||||| | ||| Sbjct 6628 AAAGCAGCTGGTAACACGAATTGGTAA-GGCCGTACTATCAGCATCCAAGCTAAAGCCGA 6570 Query 1193 ATTATCAGAAATCTACAGCTCACGTTTTCACGGAATGACACTTAGAACGCCTAGAACAAA 1252 ||||||||||| ||| |||||| || ||| ||| || |||||| ||| ||||||| || Sbjct 6569 ATTATCAGAAACCTATAGCTCATATTACCACTGAACGATACTTAGTACGTCTAGAACGAA 6510 Query 1253 CAGACTTCTTGTAGAATTATCTGCTT--ATCGTTGGCATGCAGCAGTCACCTGCATCTCG 1310 || ||||| |||||||| ||||||| || |||| |||||||| |||| | |||||||| Sbjct 6509 CATACTTCATGTAGAATGCTCTGCTTCAATTGTTGACATGCAGCGGTCAGCCGCATCTCG 6450 Query 1311 TAGGCCATACAGCGCTTCACCACTTTTGCATAATGTAAGCATGACGTTGGACTGCAGCGG 1370 | ||||||||| ||| | | || |||||||||| ||||||| |||| |||||||||| Sbjct 6449 TTGGCCATACACCGCCTTGCAACCTTTGCATAATAAAAGCATGGCGTTTGACTGCAGCGC 6390 Query 1371 AGCATTCACAACAGGCACTCACAAGACCCACTACTCCTAGATTTGAAGTTATTTTTACAA 1430 | | | | | | ||||||| |||| ||||||| ||||| |||||||||||||| ||| Sbjct 6389 ACCGCT-ATAGCGGGCACTCGTAAGAGCCACTACAGCTAGAATTGAAGTTATTTTTCCAA 6331 Query 1431 CAGAGGTACTAAAGCGTGATGATACCTATAAGCGCAGAGAGCACCTAAACATCGGCTGGC 1490 |||| |||| |||| ||||||||||||||||| ||| | |||| |||||| || | Sbjct 6330 CAGAAGTACAAAAGTATGATGATACCTATAAGCACAGGGTGCACGTAAACA--AGC--GG 6275 Query 1491 TGACGTGGTCGTAGCATTGTTTTTTAC-CTAAATGGAATTGCGCGAACTTGCTTGCTTAT 1549 |||| | || || |||||||||| || | | || | || | | | |||||||||| Sbjct 6274 TGACATCATCATACCATTGTTTTTCACACGAGTTGCACTT--TCTACGTCGCTTGCTTAT 6217 Query 1550 CGCAAAGTCGCTCAAT 1565 | |||||||||||||| Sbjct 6216 CTCAAAGTCGCTCAAT 6201 Score = 311 bits (344), Expect = 2e-81 Identities = 250/302 (83%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 619 TGGTCGCTCTAACGTTACAACAATTTGCTGATATCAATTTCGCTACCTACAACCAAAATG 678 || || |||||| ||| ||||||||||||||||| || | |||||||| || || || Sbjct 1223 TGATCACTCTAATGTTGTAACAATTTGCTGATATCGATGTTGCTACCTATTACTAAGGTG 1164 Query 679 CACTTGCAGGCTAGCAGTGAAGCGTTTTTGCACTCGCATTCTCAGAGACCTAAGGCTACG 738 ||||| |||| ||||||| || |||||||| ||||||||| ||||||||||||| || | Sbjct 1163 CACTTACAGGTTAGCAGTAAAAAGTTTTTGCGCTCGCATTCACAGAGACCTAAGGTTAGG 1104 Query 739 AGCTTGAATCTAGGATTCATGTTCAGATAGCAAAACCTAGAATTCCTTCAACAATCATAC 798 ||||| ||||||||| |||| |||| ||||||||| |||||| |||||||||| ||| || Sbjct 1103 AGCTTAAATCTAGGACTCATTTTCACATAGCAAAATCTAGAACTCCTTCAACAGTCAAAC 1044 Query 799 TTTTCTCGAGTCCACTATGCATCAGAGCCGTTCCTCCGCTGCATACATTAGTATCACCCT 858 ||||||||||||||||||||||| ||| |||| ||||||| | | || ||||||||| Sbjct 1043 TTTTCTCGAGTCCACTATGCATCGGAGTCGTTTCTCCGCTTCGTGATATACTATCACCCT 984 Query 859 CCCCTTCTCCTGGTCCACCATTTTTAAGTTTTGCCCCGTACGCTCTTATATCCCCGACTG 918 | |||| ||||||||||||||||| | ||| |||||||||||||| | | | ||||| Sbjct 983 CGACTTCCCCTGGTCCACCATTTTTGATTTTCGCCCCGTACGCTCTCGTGTTTCAGACTG 924 Query 919 TA 920 || Sbjct 923 TA 922 Score = 190 bits (210), Expect = 5e-45 Identities = 217/292 (74%), Gaps = 21/292 (7%) Strand=Plus/Minus Query 3568 AAGCTAACTACCTAAATATCTAGTATCCTGGAGGAAACTGGTATATCGTGACATTTGCGA 3627 || |||| ||||| ||||||||||||| || ||||||| ||| | |||||||||||| Sbjct 2240 AAACTAAGTACCTGAATATCTAGTATCATGAAGGAAACCGGTGTGTCGTGACATTTGT-- 2183 Query 3628 GAAGGTACACACGTAAGCTTGGCATTCGTTGCTAAACTAGCATGCACTTTGAAATAAAAT 3687 ||||| |||||||| ||||||||| | || ||||||||||||||| |||| Sbjct 2182 --------ACACGCAAGCTTGGTATTCGTTGCAATGCTGACATGCACTTTGAAATGAAAT 2131 Query 3688 GAATATGTATGAGGAACAAGTTTTTTATTTT----CAAGAACAAATACTTCTACACATTA 3743 | |||||||||||||||||||||||||||| ||||||||||||| |||| || | Sbjct 2130 AATTATGTATGAGGAACAAGTTTTTTATTTTTGAGAAAGAACAAATACTATTACAAATCA 2071 Query 3744 TC--ACAT-----TGGGATGCATTACTTTGGTCGCGAATGTGTTCCGCGCCACGATGCCT 3796 || |||| |||||||||||||| | | ||| |||| || | ||| | | Sbjct 2070 TCATACATACAAACAGGATGCATTACTTTTGCTGGTAATAGGTTCTGCACAGCGACGTGT 2011 Query 3797 GCTCGCGCATAGCTGCTGCATACTGCCTCACGCGCTCCTCAACTCGCCGCTG 3848 ||| |||| | ||| | |||| |||||| || | ||||||| ||| ||| Sbjct 2010 GCTTGCGCGGAACTGTTTTATACAGCCTCATGCTCGGCTCAACTGGCCACTG 1959 Score = 185 bits (204), Expect = 2e-43 Identities = 167/207 (81%), Gaps = 10/207 (5%) Strand=Plus/Minus Query 3568 AAGCTAACTACCTAAATATCTAGTATCCTGGAGGAAACTGGTATATCGTGACATTTGCGA 3627 || ||| |||||| |||||||||||| || |||||||||| | |||||||||||| | Sbjct 3183 AAACTAGCTACCTGCATATCTAGTATCATGAAGGAAACTGGCGTGTCGTGACATTTGTAA 3124 Query 3628 GAAGGTACACACGTAAGCTTGGCATTCGTTGCTAAACTAGCATGCACTTTGAAATAAAAT 3687 | ||||||| | |||||||| |||||||||||| || ||||||||||||||| |||| Sbjct 3123 GGAGGTACAGGC--AAGCTTGGTATTCGTTGCTAAGGTAACATGCACTTTGAAATGAAAT 3066 Query 3688 GAATATGTATGAGGAACAAGTT--TTTTATTTTCAAGAACAAATACTTCTACACATTATC 3745 | ||||||||||| ||||||| ||||||||| |||||| |||||| |||| || || Sbjct 3065 AATTATGTATGAGGGACAAGTTTTTTTTATTTTTAAGAACTAATACTATTACAAATCAT- 3007 Query 3746 ACAT-----TGGGATGCATTACTTTGG 3767 |||| | ||||| |||||||||| Sbjct 3006 ACATACGACTAGGATGTATTACTTTGG 2980 Score = 181 bits (200), Expect = 3e-42 Identities = 319/453 (70%), Gaps = 35/453 (8%) Strand=Plus/Minus Query 3568 AAGCTAACTACCTAAATATCTAGTATCCTGGAGGAAACTGGTATATCGTGACATTTGCGA 3627 |||||| |||||| |||||||||||| || |||||||||| | || ||||||| | | Sbjct 3949 AAGCTAGCTACCTGAATATCTAGTATTATGAAGGAAACTGGCGTGTCATGACATTGGTAA 3890 Query 3628 GAAGGTACACACGTAAGCTTGGCATTCGTTGCTAAACTAGCATGCACTTTGAAATAAAAT 3687 ||| |||||| |||||||| |||| ||||||| || ||||||||||||||| |||| Sbjct 3889 AGAGGAACACAC--AAGCTTGGTATTCTTTGCTAAGGTAACATGCACTTTGAAATGAAAT 3832 Query 3688 GAATATGTATGAGGAACAAGTT---TTTTATTTTCAAGAACAAATACTTCTACA---CAT 3741 | ||||||||||| ||||||| ||||||||| |||||| |||||| |||| ||| Sbjct 3831 AATTATGTATGAGGGACAAGTTTTTTTTTATTTTTAAGAACTAATACTATTACAAATCAT 3772 Query 3742 T-ATCACATTGGGATGCATTACTTTGG-------TCGCG--AATGTGTTCCGCGCCACGA 3791 | || | | ||||| |||||||||| | | | || |||| || || | | Sbjct 3771 TCATACGACTAGGATGTATTACTTTGGCTGGAAATAGGGGCAACCTGTTTCGGACCGCAA 3712 Query 3792 TGCCTGCTCGCGC-ATAGCTGCTGCATACTGCCTCACGCGCTCCTCAACTCGCCGC---- 3846 ||||||||||| | |||| | |||||||| ||||| ||||| || | | || Sbjct 3711 TGCCTGCTCGCCCAATAG-TTCTGCATACCTCCTCAGCATCTCCTGAATTTGTTGCAACT 3653 Query 3847 TGTTCTTCCTGAC-GC---CTCCTCTCTTCTTCTCGTGCGCGC-TCTT---GCTCCTTC- 3897 | ||| || | || | |||| |||||| ||| ||| |||| |||| || Sbjct 3652 GGCTCTCCCACTCAGCAAACATCTCTGCTCTTCTGTTGCACGCGTCTTCAAACTCCGTCT 3593 Query 3898 --CGACGGTTTTCCTCGGCGTCCCGACGGGCTGCTTCTCCAGAGTTTCCACTGTTGTTTG 3955 || | ||| ||| | || |||| || |||||| ||||||| || | |||||| Sbjct 3592 CTCGTCTGTTCAACTCTTCATCTAGACGAGCCGCTTCTTCAGAGTTATCATTATTGTTTC 3533 Query 3956 CCCACATGGTGACTTTGTCGAGAGTGTATGTGC 3988 | ||||| | | | || ||| || ||||||| Sbjct 3532 CTGACATGTTTATTATGGCGAAGGTATATGTGC 3500 Score = 154 bits (170), Expect = 4e-34 Identities = 121/145 (83%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 3347 TGCTTAATAGTTATGCTTTACCTGTGTACTAAAGGTACAAACTTTTGAACAAGTTTTCAC 3406 |||||||||| |||| ||||||||| ||||||||||| ||||||| |||| || ||||| Sbjct 6049 TGCTTAATAGGTATGTTTTACCTGTATACTAAAGGTATAAACTTTAGAACTGGTCTTCAC 5990 Query 3407 GATGAGTGTCCAACATTCCTATTATGAACTGGCGAGCTAGGACTATGCATCCAGTACAGC 3466 |||||| ||| ||||||||||| | |||||||||||| || ||||||||||| || | Sbjct 5989 TATGAGTATCCCGCATTCCTATTACGGACTGGCGAGCTAAGAAAATGCATCCAGTTCAAC 5930 Query 3467 AATTAAACGTTGTTAACGAATGGAC 3491 |||| |||||| |||| |||| || Sbjct 5929 AATTGAACGTTTTTAAACAATGTAC 5905 Score = 152 bits (168), Expect = 1e-33 Identities = 171/228 (75%), Gaps = 23/228 (10%) Strand=Plus/Minus Query 41 AAGGAATAATGGTGCAAATAATGCATACAGGTTTATATTTTATTTCAGGAATGATATCAT 100 |||||| ||||||| ||||||||||||| |||||| ||||| || || |||||||| | Sbjct 1452 AAGGAAAAATGGTGAGGATAATGCATACAGTTTTATACTTTATGTCGGGCATGATATCGT 1393 Query 101 ACACTGTGTTAACTTTCCTGTT------GGTAATCATGCTCCGTATAAATATAAAAATAT 154 ||||| ||||||| ||| || | ||||| ||||||| || | |||||||| Sbjct 1392 CGACTGTATTAACTTCCCTATTAGCTTGCGCAATCAGGCTCCGT---AAGACAAAAATAT 1336 Query 155 TGGTAATCTTTTGCAGGTACTCGTTACGGTACAAATGCAATGCAACCAAAGAGTGTTGAA 214 |||||||| | |||| |||||||||||||| |||||||| |||| |||| | Sbjct 1335 ATGTAATCTTCAGAAGGTGCTCGTTACGGTACA-----AATGCAACTTAAGATTGTTTAC 1281 Query 215 AATCTAACTGCAAACAGCCCTGCATGCTGAGCATGCATGGAGT-TTGC 261 | ||||||||||| ||||| |||||||| ||||||| |||| Sbjct 1280 ACTCTAACTGCAA--------GCATGTTGAGCATGTATGGAGTCTTGC 1241 Score = 116 bits (128), Expect = 1e-22 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 3886 TCTTGCTCCTTCCGACGGTTTTCCTCGGCGTCCCGACGGGCTGCTTCTCCAGAGTTTCCA 3945 |||||||| |||| ||| |||| || ||| ||||| || |||||| |||| ||| || Sbjct 1780 TCTTGCTCTTTCCAACGTCTTTCGACGATGTCTCGACGAGCGGCTTCTTCAGAATTTTCA 1721 Query 3946 CTGTTGTTTGCCCACATGGTGACTTTGTCGAGAGTGTATGTGCC-------TGTATAGCT 3998 || |||||| || ||||| | | | |||||| || ||||||| | ||||||| Sbjct 1720 CTATTGTTTCCCGACATGTTTATTGTGTCGAAGGTATATGTGCTGATTGATTTTATAGCT 1661 Query 3999 CCTTGTTATTATGTCGATGGTACATGTGCTAATGACTAAGTGTACAGATTCTTCCCTGAA 4058 || || |||||||||| ||| |||||||||||| | | ||||||| | || | | | Sbjct 1660 CCCGGTGATTATGTCGAGGGTCTATGTGCTAATGATTGATTGTACAGTTCGTTTCTTCGA 1601 Query 4059 TTTATACAATTTCGACACATACCTAATA 4086 || ||| || | || ||||||||| Sbjct 1600 TTCATATTTACTCAAAACCTACCTAATA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13254256908075