Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008985.1 Length=4914 Score E Sequences producing significant alignments: (Bits) Value seq958 493 4e-136 >seq958 Length=64763 Score = 493 bits (546), Expect = 4e-136 Identities = 430/531 (81%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 2434 TGTTTAGGTGCTCTCTGCGCTTATAGGTATCATCACGCTTTAGTACCTCTGTTATAAAAA 2493 |||||| |||| | ||| ||||||||||||||||| |||| |||| |||||| ||||| Sbjct 6280 TGTTTACGTGCACCCTGTGCTTATAGGTATCATCATACTTTTGTACTTCTGTTGGAAAAA 6339 Query 2494 TAACTTCAAATCTAGGAGTAGTGGGTCTTGTGAGTGCCTGTTGTGAATGCTCCGCTGCAG 2553 ||||||||| ||||| ||||||| |||| ||||||| | | | | | | |||||||| Sbjct 6340 TAACTTCAATTCTAGCTGTAGTGGCTCTTACGAGTGCCCGCTAT-AGCGGTGCGCTGCAG 6398 Query 2554 TCCAACGTCATGCTTACATTATGCAAAAGTGGCGAAGCGCTGTATGGCCTACGAGATGCA 2613 || |||| ||||||| |||||||||| || || | ||| ||||||||| ||||||||| Sbjct 6399 TCAAACGCCATGCTTTTATTATGCAAAGGTTGCAAGGCGGTGTATGGCCAACGAGATGCG 6458 Query 2614 GGTGACTGCTGCATGCCAACGAT--AAGCAGATAATTCTACAAGAAGTCTGTTTGTTCTA 2671 | |||| |||||||| |||| || ||||||| |||||||| ||||| |||| |||||| Sbjct 6459 GCTGACCGCTGCATGTCAACAATTGAAGCAGAGCATTCTACATGAAGTATGTTCGTTCTA 6518 Query 2672 GGCGTTCTAAGTGTCGTTCCGTGAAAACGTGAGCTGTAGATTTCTGATAATTCGTCCCCA 2731 | ||| |||||| |||||| ||| || |||||| ||| |||||||||||||| | | Sbjct 6519 GACGTACTAAGTATCGTTCAGTGGTAATATGAGCTATAGGTTTCTGATAATTCGGCTTTA 6578 Query 2732 GCTTGGACGCTGATGCCACGGCCGTTAGCAGTTCACGTTACCTGCTGCTTTTACTCATAT 2791 ||||||| |||||| |||||| ||| || ||| |||||| ||||||||||| ||||| Sbjct 6579 GCTTGGATGCTGATAGTACGGCC-TTACCAATTCGTGTTACCAGCTGCTTTTACCCATAT 6637 Query 2792 TCATAGCACCTTCAAGGTGTCACATGCAAAACAGGTAGAAATTTTTGCAAATGCATCTGA 2851 ||||||||||||||||| | ||||| |||||||||| ||||||| | |||||||||||| Sbjct 6638 TCATAGCACCTTCAAGGGGGCACATCCAAAACAGGTCAAAATTTTCGAAAATGCATCTGA 6697 Query 2852 CCTCTATGCACTATAATATCGTCATCACTGAATACGAATACATCACCCTTGCCTTGCCTA 2911 || ||||||| |||| |||| |||||||||||| |||| | |||| |||||| | ||| Sbjct 6698 CCACTATGCATTATAGTATCTTCATCACTGAATCCGAAAATGTCACACTTGCCCCGACTA 6757 Query 2912 GATGCTTGATTTTAAAGTTATGGACCATACGCTCTCGTGTCACTGACTGTA 2962 |||| | | ||| ||||||| ||||||||||| ||| |||||| |||| Sbjct 6758 AATGCCTAACTTTGAAGTTATAGACCATACGCTAATGTGCCACTGATTGTA 6808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15601331593365