Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_008987.1 Length=5050 Score E Sequences producing significant alignments: (Bits) Value seq958 675 0.0 >seq958 Length=64763 Score = 675 bits (748), Expect = 0.0 Identities = 744/974 (76%), Gaps = 21/974 (2%) Strand=Plus/Plus Query 1 TTACCTGCACAGCTCTGCATAGTCCTACACTGATACGGATGAAAGAAATGAAACTAAACA 60 ||||||||||| |||| ||| ||||||||| |||| ||| |||||||| ||| |||||| Sbjct 4877 TTACCTGCACAACTCTCCATCATCCTACACTAATACCGATAAAAGAAATAAAAGTAAACA 4936 Query 61 TATTAAACACAACC-ATTTATTTGAATCTAAGGAACACTATAAAC--CA---TTTACCGA 114 |||||||||||| ||| ||| |||||| ||||| || | | || || || | Sbjct 4937 TATTAAACACAATTTATTCATTCAAATCTACGGAACTTTACATGCTGCACTCTTGAC--A 4994 Query 115 C-ATTAACACTAATTGGATTTAGCTGCACCAGAGCCGGAACCACTGATGTTGCGCGCCGA 173 | |||||||||| || |||||||||||||| ||||||||||| || |||||||| ||| Sbjct 4995 CTATTAACACTATTTAGATTTAGCTGCACCGGAGCCGGAACCGCTAATGTTGCGAGCCAG 5054 Query 174 GTCCAGCAGCATTTC--TGTGT-CCGTACGTTCACCCATGGAATAATATTCCACGATGTC 230 ||| |||| || || ||||| ||||||||| ||| ||| || | |||||| ||| || Sbjct 5055 GTCAAGCAACACTTGCATGTGTGCCGTACGTTTACCTGTGGGATGACATTCCAAGATATC 5114 Query 231 CGGATTGTCTTGGTGGACTTTTGCAATAATGGCACTGAACATCTC-TTTGGATTCTTTAA 289 |||| ||||| | ||||| || || || | | |||||||||| ||| ||||||| | Sbjct 5115 TGGATCGTCTTTAGGCACTTTCGCGATGATCGGATTGAACATCTCCTTTAAATTCTTTGA 5174 Query 290 GAAGAATCGCCGGTACCAAGTATTTAGTCAACCACGCAGAAACGTGCCGGGCACAGAAAT 349 | ||| ||||||||||| | |||||||||||| || ||||| || |||||| | Sbjct 5175 ACATAATTGCCGGTACCAAAGAACGAGTCAACCACGCCGAGACGTGAGCGGTACAGAAGT 5234 Query 350 GATGCCAGTGGCGTTCGTTCTTGCACTCACGTCCAGGTGATAACAGTTCATCATTAGACT 409 ||||||||||| ||| ||||||||||||||||||||| |||| ||||| || | | || Sbjct 5235 GATGCCAGTGGAGTTTGTTCTTGCACTCACGTCCAGGAGATACCAGTTTAT---TTGGCT 5291 Query 410 TCTTGCCGCAGGAGCAGGTGTCGCTGGCGACCGGCTTGCACTTCTTAAAGCAAATCTTCT 469 |||||| ||| ||||||||||||||| || | | ||||| ||| |||| || ||| | Sbjct 5292 TCTTGCTACAGAAGCAGGTGTCGCTGGGTACTGCCATGCACCTCTGGAAGCGAAGCTTTT 5351 Query 470 TCTCGACGAAGTTTAGTATCGTGGGTAGCCTCACGAAATCTCTGTCACCTGGCGGTGGCC 529 |||||||||| || |||| | | |||||||| ||| ||| |||||||||||||||| Sbjct 5352 TCTCGACGAACCGTATTATCTTAGACAGCCTCACAAAACTTCTCTCACCTGGCGGTGGCC 5411 Query 530 CCCAGAATAGAGGCATGAGCCAGTCCCAATTAATCAGCAGGCGATCTTTCTCCGGCCTCG 589 ||| ||||||||| |||| ||||||||||| |||||||| ||||| | |||||||| Sbjct 5412 ACCAAAATAGAGGCGTGAGGCAGTCCCAATTTATCAGCAGACGATCGGCTTTCGGCCTCG 5471 Query 590 TTGCATCGAAGCTGTAGCGGACGGGCAATACCTTCCCGTTAAGGAAAGCCAACTCCAGCG 649 ||||||| ||||||||| ||| | | || |||||||||| |||| ||| | ||| Sbjct 5472 TTGCATCAAAGCTGTAGTGGATGTGGCATGATTTCCCGTTAAAAAAAGTCAAGTTCAGTT 5531 Query 650 TTCGCATCGACCCAAGAAACTCTCGATATGCTTTGTCGAAAGCCAAAAAGTCGGTGATGC 709 ||| || || ||| ||||||||| |||||| |||||||| | | ||| | Sbjct 5532 TTCCGATTGATCCATGAAACTCTCTATATGCAGTGTCGAAATGCTTCATATCGCCAACCG 5591 Query 710 TGAAAGGAGCCCCATCAGGTATAGCAGGTCCGCGGATCGTGAAGGTGTCCACCGGGAAAG 769 | |||| | || ||| || ||| ||| ||||| | ||||||||||||||| ||||||| Sbjct 5592 TCAAAGTGGACCGATCGGGGATAAGAGGCCCGCGTACCGTGAAGGTGTCCACAGGGAAAG 5651 Query 770 TAAGTGTTGTGTCTTCAGCTTCTTGAGACGACATTGTTGCGTTCTGGATGTCACGGGGCT 829 | |||| | |||||| | ||| ||| ||||| | ||||| ||||| | ||||| ||| | Sbjct 5652 TGAGTGCTCTGTCTTGATCTTGTTGGGACGATA-TGTTGAGTTCTAGGAGTCAC-GGGAT 5709 Query 830 TTTGCGTCTAAGTG-TGTTCCTTCGTGAACGTTGACCGTTTAGTG-CTAGCCACCGACTG 887 |||||| ||| ||| ||||||| ||||| ||||||||||| ||| || || || ||||| Sbjct 5710 TTTGCGCCTAGGTGATGTTCCTCCGTGATTGTTGACCGTTTGGTGTCTCGCAACTGACTG 5769 Query 888 TCCGCAAATAATTTTATAGCACGCCAGTTGTTTATCATACCGAATAAAGAAAACAATACC 947 || ||| ||| || ||| | ||||| |||||||| || || ||||||||||| Sbjct 5770 CCCAAAAAACCATTTTTATCACATGA-TTGTTGCTCATACCGGATGAACAAAACAATACC 5828 Query 948 GCGATAAATATATC 961 | ||||| |||| Sbjct 5829 GTCATAAAATTATC 5842 Score = 556 bits (616), Expect = 4e-155 Identities = 476/582 (82%), Gaps = 12/582 (2%) Strand=Plus/Plus Query 4459 TTTTGATA-CGATCCCGTAGTCTCCACATTTTTTCTATCTTCTGTGTAATGACACATGAT 4517 |||||||| |||||||| |||| |||| || |||||||||| || ||| | |||| | Sbjct 4288 TTTTGATAACGATCCCGCAGTCGTCACACATTACCTATCTTCTGGGTCATGCCTCATGGT 4347 Query 4518 TTGtttttttATTTAAACGATTGCGCGCCACGTAATGCTACCTATTATCGGATAGCAATC 4577 |||||| | |||||||| | ||||||| ||| |||||| || ||||| || ||| Sbjct 4348 TTGTTTCAT-ATTTAAACAACAGCGCGCCGCGTGGTGCTACGTACAATCGGGTA---ATC 4403 Query 4578 TATGCCTATATGGAGTTATACATAGAACGCTAATTGCCGCCGGTCTTGGGCATTACACTG 4637 |||| | ||||||||||| |||||||||||||||||||||||||||| | | | | |||| Sbjct 4404 TATGTCCATATGGAGTTACACATAGAACGCTAATTGCCGCCGGTCTTTGTCGTAATACTG 4463 Query 4638 TTTGTGGCTTATCTGCAGATTCTGCTCATGGATCAAGTTAAGAAAAACCTTATGTAGACG 4697 ||| ||| | ||||||||| | |||||||||||||||||||||||||| || |||||| Sbjct 4464 ATTGCGGCCTCTCTGCAGATGTTACTCATGGATCAAGTTAAGAAAAACCTCATTTAGACG 4523 Query 4698 TCGCATATTCCTGTACGGTCTACTCTGTATCTAAACGTCGCAGGTACACGTACGGGGGAG 4757 || |||||||||||| ||||| ||| ||| |||| |||||||||||||||||| | || Sbjct 4524 TCTCATATTCCTGTATGGTCTGCTCCGTACCTAAGCGTCGCAGGTACACGTACTCTGAAG 4583 Query 4758 CGAATGCACACTCAGGCATTGCTCAAGACATATGATAAGC--ACGTTCCTAAGCATAGTT 4815 ||||||||||||||||| ||||||||||||||||||||| | |||| ||||| |||| Sbjct 4584 CGAATGCACACTCAGGCCGTGCTCAAGACATATGATAAGCATATATTCCCAAGCACAGTT 4643 Query 4816 TGTGATAACGGAGCTTTGCATCCCAAGTGCACATCACTGTAATGCTCACACCTTGCAACT 4875 ||| |||| |||||||||||| ||| |||||||| | | |||| |||| |||||| ||| Sbjct 4644 TGTAATAAAGGAGCTTTGCATGCCATGTGCACATAATTCTAATCATCACGCCTTGCGACT 4703 Query 4876 CAACTGAGAATTATAGTGGAGCGACGTGCTATGCCGCGCCTA--GGCACGTTA---TCTA 4930 |||||| | | |||||| | |||||||||||| ||| ||| ||||||||| ||| Sbjct 4704 CAACTGCAAGTGATAGTGATGTGACGTGCTATGCAGCGGCTAGTGGCACGTTACGTGCTA 4763 Query 4931 GCCGTCACCTCTAGTGCTGTCCAAGCTTGACTTGTTTGTATGTACCCTAGAGTTGTCATG 4990 ||||| ||||||||||| ||||||||| ||||| | |||| || | |||||| ||||| Sbjct 4764 GCCGTTACCTCTAGTGCCATCCAAGCTTCACTTGATAGTATCTAACACAGAGTTTTCATG 4823 Query 4991 AGAGATACTAAATTTGAACTTGAGGCAACGTAAGAGGGAACG 5032 |||| |||| |||| ||||||||||||||||||||| |||| Sbjct 4824 AGAGGAACTAGATTTAAACTTGAGGCAACGTAAGAGGAAACG 4865 Score = 455 bits (504), Expect = 1e-124 Identities = 433/555 (78%), Gaps = 30/555 (5%) Strand=Plus/Plus Query 3033 TATGCAGCAGCATTGCGCGAGCAGGCATTGGGACGCGGAAGAA---------ATAACCGG 3083 ||||||| | |||| |||||||||||||| | || || | || || | Sbjct 3685 TATGCAGAACTATTGGGCGAGCAGGCATTGCGGTCCGAAACAGGTTGCCCCTATTTCCAG 3744 Query 3084 TGAAACTAATGCATCCTACTCGTATGTGATAACGTGTAAAAGTATTTGTTCGCAAATATA 3143 ||| |||| ||||||| ||||||| || | ||||| |||||| |||| ||| ||| Sbjct 3745 CCAAAGTAATACATCCTAGTCGTATGA-ATGATTTGTAATAGTATTAGTTCTTAAAAATA 3803 Query 3144 AAAAATAAAACTTGTTCCTCATACATATTTATTTTATTTTAAAGTGCATGTTAGCTTAGC 3203 ||||| |||||||| ||||||||||| |||||| |||| ||||||||||||| |||||| Sbjct 3804 AAAAA--AAACTTGTCCCTCATACATAATTATTTCATTTCAAAGTGCATGTTACCTTAGC 3861 Query 3204 AACGAATGCCAAGCTT--------------ACAAATGTCACGACACACTGGGTTCCTTCG 3249 || |||| |||||||| || ||||||| ||||| | | ||||||| Sbjct 3862 AAAGAATACCAAGCTTGTGTGTTCCTCTTTACCAATGTCATGACACGCCAGTTTCCTTCA 3921 Query 3250 CGATACTATGGATTCAGGTAGTTAGCTGAATGATGATAATAACATATTGTACTAGCTCTA 3309 |||||| |||||||||| ||||| ||| |||||||||| ||| |||||||| |||| Sbjct 3922 TAATACTAGATATTCAGGTAGCTAGCTTAATAATGATAATAATATAGTGTACTAGTTCTA 3981 Query 3310 TCCACTGAGATGTTGTACAATCTGCATCTTATGTATAGATCACCGTGGCCACTACACTTC 3369 ||||||||||||||||| |||||||||| |||| ||| || | ||||| ||| |||||| Sbjct 3982 TCCACTGAGATGTTGTAGAATCTGCATCCTATGCATAAATAAACGTGGTCACCACACTTT 4041 Query 3370 ACGACACGACTGTACGCGCACCGCGACATGTTATGCAGCCATGGTTAAGTACGGTGCACG 3429 |||||| |||| ||| || || ||| |||||||| || | || |||||||||||| Sbjct 4042 GTAACACGATTGTAGCAGCAGCGTGATATGCTATGCAGCGATAGGTAGGTACGGTGCACG 4101 Query 3430 TTATATAAAAATTCTAGGTAAGGTATCTGTCGTACTATAGTCTTAAC----ATTACAGGA 3485 ||| ||| |||||||||||||||||||| |||||||| | |||| |||||||| Sbjct 4102 TTACATAGTGGTTCTAGGTAAGGTATCTGTCATACTATAGACCTAACATCTATTACAGGG 4161 Query 3486 AAAATAAAAAGTACACATATTTAGAATAATGTTTTATTACATCATTATAGTCGAACCAAA 3545 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 4162 TAAATAAAAAGTACACATATTTAGAATAATGTTTTATTACATCATTACGGTCTAACCAAA 4221 Query 3546 CCTGTAAGCTATACA 3560 ||||| |||||| || Sbjct 4222 CCTGTGAGCTATCCA 4236 Score = 315 bits (348), Expect = 2e-82 Identities = 268/326 (82%), Gaps = 7/326 (2%) Strand=Plus/Plus Query 1799 GCTACAATTGGGGACACAAGAGCGTACGGGGAAAAACTTAAAAATGGTAGATCAGGGAAA 1858 |||||| | | |||| ||||||||||||| ||| | ||||||||| || ||||| || Sbjct 920 GCTACAGTCTGAAACACGAGAGCGTACGGGGCGAAAATCAAAAATGGTGGACCAGGGGAA 979 Query 1859 TGGGAGGGAGATACTAATGTAT-AC--AGCGGAGAAACGGCTCTGATGCATAGTGGAGTC 1915 ||||| |||| || ||| || |||||||||||| ||| ||||||||||||| || Sbjct 980 GTCGAGGGTGATAGTA---TATCACGAAGCGGAGAAACGACTCCGATGCATAGTGGACTC 1036 Query 1916 GAGAAAAGTTTGA-TGGTGAAGGAGTTCTAGGTTTTGCTATGTGAAGATAAGTCCTAGAC 1974 ||||||||||||| || |||||||||||||| |||||||||||||| || ||||||||| Sbjct 1037 GAGAAAAGTTTGACTGTTGAAGGAGTTCTAGATTTTGCTATGTGAAAATGAGTCCTAGAT 1096 Query 1975 TCAAGCTCCTAACCTTAGGTATCTGACAGTGCGAGCGCAAAAACTCTCTACTGCTAGCCT 2034 | |||||||||||||||||| |||| | |||||||||||||||| | |||||||| ||| Sbjct 1097 TTAAGCTCCTAACCTTAGGTCTCTGTGAATGCGAGCGCAAAAACTTTTTACTGCTAACCT 1156 Query 2035 GCGAGTGCATCTGGGTTGTAGGTAGCGACATCGACATCAGTAAATTGTTACAACATTAGA 2094 | |||||| || || |||||||| ||||||| ||||| ||||||||||||||||||| Sbjct 1157 GTAAGTGCACCTTAGTAATAGGTAGCAACATCGATATCAGCAAATTGTTACAACATTAGA 1216 Query 2095 GCGACCACCCGCAACGGCGATAACGC 2120 | || || | | ||||||| ||||| Sbjct 1217 GTGATCATCTCCGACGGCGAAAACGC 1242 Score = 282 bits (312), Expect = 1e-72 Identities = 273/354 (77%), Gaps = 24/354 (7%) Strand=Plus/Plus Query 1182 CGATAGAATTTACGCTACCATTTTGGTACATCGTT-AACAAGGTTTAATTGCTGTACTGG 1240 ||||| ||||| ||||||| || ||||||| ||| || || ||| ||||| || ||||| Sbjct 5880 CGATAACATTTATGCTACCAATTCGGTACATTGTTTAAAAACGTTCAATTGTTGAACTGG 5939 Query 1241 ATGCATTGTCTTAGCTCGCCAGTCCATAATAGGAATGCTGGACACTCATCGTGAAAACCC 1300 ||||||| ||||||||||||||||| |||||||||||| ||| |||||| ||||| ||| Sbjct 5940 ATGCATTTTCTTAGCTCGCCAGTCCGTAATAGGAATGCGGGATACTCATAGTGAAGACCA 5999 Query 1301 GTTTAGAAGTTTGTACCTTTAGAATACAGGTAAAACATACCTATTAAACATGTACGGCAT 1360 ||| |||||| ||||||||| |||||||||||||||||||||||| ||| ||| |||| Sbjct 6000 GTTCTAAAGTTTATACCTTTAGTATACAGGTAAAACATACCTATTAAGCATATACAGCAT 6059 Query 1361 TGCATGCGTGATAAGAGCGTGTCTTAGCAACGACAACGATGCAGATCGGCCGCAGTTCTA 1420 || |||| |||||| |||||||||||| ||||||| | ||| ||| Sbjct 6060 TGTGTGCGCGATAAG--------------ACGACAACGATGAAGATCGGATGTAGTACTA 6105 Query 1421 GTAGGGGAGAACAACTATCATGCGATGTTTGTCCGAATACTGATAACACGAAAGGTATAA 1480 ||| || | ||| || | || |||| |||| |||| ||||||||||| |||||||| Sbjct 6106 GTAAGGTAAAACTACCAGTATACGATCTTTGACCGAGAACTGATAACACAGGAGGTATAA 6165 Query 1481 ATAAAATTGATTGGGTTTTTTCCCAACAAACTAACCGTTCGGTTACCGAGCCAC 1534 | || ||||| || | |||||| |||||||||||||| |||| || Sbjct 6166 ACAACATTGA---------TTACAAACAAAATAACCGTTCGGTTATTGAGCGAC 6210 Score = 255 bits (282), Expect = 2e-64 Identities = 234/297 (79%), Gaps = 18/297 (6%) Strand=Plus/Plus Query 3086 AAACTAATGCATCCTACTCGTATGTGATAACGTGTAAAAGTATTTGTTCGCAAATATAAA 3145 ||| |||| ||||||| |||||||| || | ||||| |||||| |||| ||| ||||| Sbjct 2982 AAAGTAATACATCCTAGTCGTATGT-ATGATTTGTAATAGTATTAGTTCTTAAAAATAAA 3040 Query 3146 AAATAAAACTTGTTCCTCATACATATTTATTTTATTTTAAAGTGCATGTTAGCTTAGCAA 3205 ||| ||||||| ||||||||||| |||||| |||| ||||||||||||| |||||||| Sbjct 3041 AAA---AACTTGTCCCTCATACATAATTATTTCATTTCAAAGTGCATGTTACCTTAGCAA 3097 Query 3206 CGAATGCCAAGCTT--------------ACAAATGTCACGACACACTGGGTTCCTTCGCG 3251 ||||| |||||||| |||||||||||||||| | | ||||||| | Sbjct 3098 CGAATACCAAGCTTGCCTGTACCTCCTTACAAATGTCACGACACGCCAGTTTCCTTCATG 3157 Query 3252 ATACTATGGATTCAGGTAGTTAGCTGAATGATGATAATAACATATTGTACTAGCTCTATC 3311 |||||| || ||||||| ||| | ||| ||| | |||| ||| |||||||| |||||| Sbjct 3158 ATACTAGATATGCAGGTAGCTAGTTTAATAATGCTGATAATATAGTGTACTAGTTCTATC 3217 Query 3312 CACTGAGATGTTGTACAATCTGCATCTTATGTATAGATCACCGTGGCCACTACACTT 3368 |||| ||||| |||| ||||||||| ||| |||||| ||||||| |||||||||| Sbjct 3218 CACTAAGATGCTGTAGAATCTGCATTCTATACATAGATAACCGTGGTCACTACACTT 3274 Score = 203 bits (224), Expect = 1e-48 Identities = 394/567 (69%), Gaps = 45/567 (8%) Strand=Plus/Plus Query 2382 AAGACTCCATGCGGATGCTCAGCATGCCGGGCTGCTTGCAGTCAGCTTTTAACAAATCTT 2441 |||||||||| | ||||||| ||||| ||||||| || | ||| |||||| Sbjct 1243 AAGACTCCATAC--ATGCTCAACATGC--------TTGCAGTTAGAGTGTAAACAATCTT 1292 Query 2442 TGGTTGCATTTGTATTGTAAAAAACACTTCGTAAAGATTACATATTTTGTTTTTCATACG 2501 |||||||||||| |||| | ||| | | |||||||||||| || ||| || |||| Sbjct 1293 AAGTTGCATTTGTACCGTAACGAGCACCTTCTGAAGATTACATATATT-TTTGTCTTACG 1351 Query 2502 GAGCATGATTGCGCAAGCTAACAGGAAAGTTGACAGAGTGTATGATATCACTCCTGAAAT 2561 |||| |||||||||||||||| ||| ||||| | | ||| | ||||||| || || || Sbjct 1352 GAGCCTGATTGCGCAAGCTAATAGGGAAGTTAATACAGTCGACGATATCATGCCCGACAT 1411 Query 2562 AAAATATAAAACCGTATACACTGTTTTCATCA-TTTTCCTTCTCTATCTAAAATGGTCAT 2620 ||| |||||||| |||| || | | ||| || |||||||| | ||| |||| | || Sbjct 1412 AAAGTATAAAACTGTATGCATTATCCTCACCATTTTTCCTTTTTAATCGAAAA---TAAT 1468 Query 2621 CGGATC-TA-TTGTAACT---GCGGTTATGGTGTTTGAATCATGCTTCGTTAGCGAGCGT 2675 ||||| || ||||||| ||||| ||| || | | |||| | | | Sbjct 1469 TGGATCATACGTGTAACTAAATTCGTTATCAATTTT--ATTGTAC-TCGT--GGTACACT 1523 Query 2676 AT--TTGCCTGTAACAATAA-AATTCCCAATAATTATGCAATGCCAACTGGTCAGACCTA 2732 || || ||||| || ||||| | |||| | | || | || | Sbjct 1524 ATGATTTCCTGTTGTTGGAATTATTCC---TCATTA------GTGAGCTTATTTAACAT- 1573 Query 2733 ATAAGGTAAATTTAAAAT-AGTATAAATTGAGGAAAGGACCTGTACATTTAATCATTAGC 2791 || ||||| ||| | | | ||| ||| || |||| || ||||||| | |||||||||| Sbjct 1574 ATTAGGTAGGTTTTGAGTAAATATGAATCGAAGAAACGAACTGTACAATCAATCATTAGC 1633 Query 2792 ACATATACGCTCGTCGTAATCACAAGGACCTATACAAGCATTCAGC------ACCCTCGA 2845 ||||| || |||| | ||||||| ||| ||||| || || ||||| ||| |||| Sbjct 1634 ACATAGACCCTCGACATAATCACCGGGAGCTATAAAATCAATCAGCACATATACCTTCGA 1693 Query 2846 GAAAATTACAATGTGGGGAAGCAATAGTCAGAACTCTGGAGAAGCTGTTCGGCGAGACGC 2905 | ||| | |||| ||||| ||||||| | || |||| |||||| | ||| |||||| Sbjct 1694 CACAATAAACATGTCGGGAAACAATAGTGAAAATTCTGAAGAAGCCGCTCGTCGAGACAT 1753 Query 2906 CGAGGAAAGACGTCGCAAAGAGCAAGA 2932 || ||||||||| | ||||||||||| Sbjct 1754 CGTCGAAAGACGTTGGAAAGAGCAAGA 1780 Score = 185 bits (204), Expect = 3e-43 Identities = 172/216 (80%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 3086 AAACTAATGCATCCTACTCGTATGT--GATAACGTGTAAAAGTATTTGTTCGCAAATATA 3143 ||| ||||||||||| | |||||| ||| | ||||| ||||||||||| | | Sbjct 2042 AAAGTAATGCATCCTGTTTGTATGTATGATGATTTGTAATAGTATTTGTTCTT---TCTC 2098 Query 3144 AAAAATAAAA--CTTGTTCCTCATACATATTTATTTTATTTTAAAGTGCATGTTAGCTTA 3201 |||||||||| ||||||||||||||||| |||||| |||| ||||||||||| ||| | Sbjct 2099 AAAAATAAAAAACTTGTTCCTCATACATAATTATTTCATTTCAAAGTGCATGTCAGCATT 2158 Query 3202 GCAACGAATGCCAAGCT------TACAAATGTCACGACACACTGGGTTCCTTCGCGATAC 3255 ||||||||| ||||||| ||||||||||||||||||| || ||||||| ||||| Sbjct 2159 GCAACGAATACCAAGCTTGCGTGTACAAATGTCACGACACACCGGTTTCCTTCATGATAC 2218 Query 3256 TATGGATTCAGGTAGTTAGCTGAATGATGATAATAA 3291 || ||||||||| |||| | ||| || ||||||| Sbjct 2219 TAGATATTCAGGTACTTAGTTTAATAATAATAATAA 2254 Score = 152 bits (168), Expect = 2e-33 Identities = 130/159 (82%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 1593 CCTTAGTCATTGCACCTTCAAGGTG-CACACACAAAACAGGTAGAAATTTTTGAAAATTT 1651 || || |||| |||||||||||| | |||| |||||||||| ||||||| |||||| Sbjct 6632 CCATATTCATAGCACCTTCAAGGGGGCACATCCAAAACAGGTCAAAATTTTCGAAAATGC 6691 Query 1652 ATCTGACCCCTATGCACCATAATATCGTCATTACTGAATACGAATATATCACTCTTGCCT 1711 |||||||| ||||||| ||| |||| |||| ||||||| |||| || |||| |||||| Sbjct 6692 ATCTGACCACTATGCATTATAGTATCTTCATCACTGAATCCGAAAATGTCACACTTGCCC 6751 Query 1712 TGCCTACATGCTTAATTTTGAAATTATAGACCATACGCT 1750 | ||| |||| ||| |||||| |||||||||||||||| Sbjct 6752 CGACTAAATGCCTAACTTTGAAGTTATAGACCATACGCT 6790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16036211916525