Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 239 4e-58 seq2773 143 2e-29 seq2744 131 1e-25 SEQ58356 111 1e-19 seq4618 100 2e-16 >SEQ21942 Length=42535 Score = 239 bits (264), Expect = 4e-58 Identities = 357/498 (72%), Gaps = 9/498 (2%) Strand=Plus/Plus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || |||||||| || ||||| ||||| |||||| |||| || || || ||||||||| || Sbjct 34607 GCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATT 34666 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 || ||| | | ||||| || || || ||| | || || || ||||| || || || ||| Sbjct 34667 CCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAAC 34726 Query 20566 GACGCGTT-AAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGC-GCGG 20623 ||| || |||| || || || |||| |||||||||||| || ||| |||| Sbjct 34727 GACAGTTTGAAAGAAATCGAAG---GA-AGTTTCCAAGCTTTGCAACGATCTTGCAGCGG 34782 Query 20624 GCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAA 20683 | ||||| | || |||||| | || ||||| |||||||| ||| |||| |||||||| | Sbjct 34783 G-CGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGA 34841 Query 20684 AAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGA 20743 | || | ||||| ||||||||||| |||||||| |||||||| || ||||| | | Sbjct 34842 AGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAA 34901 Query 20744 AACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATC 20803 ||| || ||| |||| || || || || || ||||| || ||||| || | |||| Sbjct 34902 AACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATC 34961 Query 20804 CGTTTTA-TCATATGCACGATCCGATCGTACGCCAAGTTTTCATCGATTCTGTGGAAGAG 20862 | || || | | || | ||| | | | | | ||| | | || ||| |||| Sbjct 34962 CATTCTACTTCTTTG-ATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTGAAAGAC 35020 Query 20863 TTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGC 20922 || | || ||||||||||| ||||| |||||||| || |||||||| || || || Sbjct 35021 TTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGA 35080 Query 20923 AAAGGTGCGAATCCGAAC 20940 |||||||| ||||| ||| Sbjct 35081 AAAGGTGCTAATCCTAAC 35098 >seq2773 Length=85211 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || |||| | || || || || | ||||||||| ||||||||||||||||| Sbjct 66851 ATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCA 66792 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| |||||||| ||||| ||||||| ||||||||||| ||| Sbjct 66791 GACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 66732 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || |||||||| ||||| || ||| | |||| | | |||| || || | | ||| Sbjct 66731 GGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTC 66673 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| ||||| |||||||| ||||| Sbjct 66672 AACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || |||| | || || || || | ||||||||| ||||||||||||||||| Sbjct 66395 ATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCA 66336 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||||||||| ||||| || ||| |||| |||||||| || || ||| Sbjct 66335 GACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGA 66276 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||| || ||||| | ||||| || || | | || Sbjct 66275 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCA 66216 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || || || ||||| |||||||| Sbjct 66215 ACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| | || | ||||| ||||||||||||||||| || Sbjct 66623 ATACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 66564 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| ||||| || ||||| | ||||| || || ||||||||| Sbjct 66563 GACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 66504 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| || || |||| | ||| | || || | | || Sbjct 66503 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 66444 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||| || || || |||||||| ||||| || ||||| Sbjct 66443 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 || ||||| || | || |||||||||||||||||||| || | || || |||| Sbjct 67517 AATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCT 67458 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || |||||||| ||||| ||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 67457 TCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 67398 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 || || ||| | | |||| || || | | ||| || |||| || | || Sbjct 67397 TGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTC 67338 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || ||||| |||||||| Sbjct 67337 TTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||||||||| ||||| || || || || |||||| ||||| || ||| Sbjct 67274 GTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCA 67215 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||||||||| ||||| |||||||| || || || || ||| Sbjct 67214 GCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTG 67155 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||| || |||| || | || ||||| || || ||| Sbjct 67154 ACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTT 67095 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 67094 TTCACAAAAATTTGCAT 67078 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | || | || || ||||||||||||||||| || Sbjct 67079 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 67020 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| ||||| || ||||| |||| || ||||||||||| ||| Sbjct 67019 GAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGA 66960 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || |||||||| ||||| || ||| | |||| | | |||| || || | | ||| Sbjct 66959 GGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTC 66901 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || ||||| || ||||| || ||||| Sbjct 66900 AACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 >seq2744 Length=156805 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||| || ||||| | || ||||||||||| |||||||| || | |||||| Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| || |||||||| |||| || | ||| ||||| || || || || ||||| Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||| || |||| | ||||| ||||| | | ||| || || | ||| | Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||||||| || || || |||||||||||||||||| Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 >SEQ58356 Length=38410 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | || ||||| || | ||| | ||||| || || ||||| ||||| ||| Sbjct 35038 TACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGG 35097 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || |||||| || ||||||||||| |||| | ||| || || ||||| | Sbjct 35098 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 35157 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| || ||||| || ||| ||| ||||| | ||||| || |||| || || | Sbjct 35158 GAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCA 35217 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 35218 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq4618 Length=10119 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||| || ||||| | |||||||||||||| || ||||| || | || || Sbjct 417 TCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 358 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| ||||| || || ||||||| | ||| ||||| || || || || ||||| Sbjct 357 ATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 298 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 ||| ||| ||| | ||| | | ||||| |||||| | | || || || | || | Sbjct 297 GTCTTGAAT-TTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGA 239 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| |||| || || || ||||| ||||| Sbjct 238 TGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||| || ||||| | || ||||||||||| || ||||| || | || || Sbjct 645 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 586 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| || || || || ||||||| | ||| ||||| || || || || ||||| Sbjct 585 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 526 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 ||| ||| ||| | ||| | | ||| | |||||| | | || || || | || | Sbjct 525 GTCTTGAAT-TTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGA 467 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| |||| || || || ||||| ||||| Sbjct 466 TAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419790519862308