Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08-
10] 67,159 sequences; 855,081,797 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq2773 84.2 2e-11
>seq2773
Length=85211
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| |||| ||| || || || || ||||| ||| ||| || ||||||||||| || |
Sbjct 67077 ACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGA 67018
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| |||| | || |||| |||||| || ||||| || || ||||| || || ||
Sbjct 67017 GAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 66958
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078
| || || |||||| | |||| |||| | ||| | |||| | || |||
Sbjct 66957 GATGCCTTCCTTGTCC-TGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66899
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
||| | || || || ||||| || || || || |||||||||||||||
Sbjct 66898 CTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||| ||| ||||| || || ||||| || ||| || ||||| ||||| || | |
Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| |||| | || |||| |||||| || ||||| || || ||||| || || ||
Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTCG 34077
| || || || ||| ||||| |||| || | || || | || | || |||
Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTG-GCTT--TGACATTCTCAATTGTGTCCGAAGGTTCA 67128
Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | || || || || || ||||||||||||||||| ||||||||
Sbjct 67127 ACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396737404301518
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |