Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2773 134 3e-26 SEQ58356 125 2e-23 seq4618 116 9e-21 seq2744 105 2e-17 SEQ37497 100 7e-16 >seq2773 Length=85211 Score = 134 bits (148), Expect = 3e-26 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | || || || || ||||| | ||||||||| || || Sbjct 67497 TTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAA 67438 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || |||||||| ||||| ||| ||||| || ||||||||||| ||||| || Sbjct 67437 GATGAGTCGCTGTTGG---TCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC 67381 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| | ||||||||| | || || ||||| || || |||||||| Sbjct 67380 ATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTT 67321 Query 288459 GACGAATATCTGCATT 288474 ||| || ||||||||| Sbjct 67320 GACAAAGATCTGCATT 67305 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| |||||||| || || ||||| | | Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGG---TCTGGA 66960 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || ||||||||||| ||||| || || || || | ||| | ||| Sbjct 66959 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCA 66900 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || ||||| || || ||||||||||| || || |||||| Sbjct 66899 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||||| || |||| || |||||||| ||||| ||||| | Sbjct 67305 TCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGA 67246 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 67245 CAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGG---TCTGG 67189 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| |||||||||||||| ||||| || || || || | || | ||| Sbjct 67188 AGGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTC 67129 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || || || || || || || ||||| Sbjct 67128 AACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || |||||||| || || ||||| | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| || || || || || || || || || ||| Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||||||||| || |||||||| |||| ||| | |||||| Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || |||||||| || || ||||| || || || || |||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || || || || | || || || || ||||| | ||| Sbjct 66368 TGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCAAGCTGT 66309 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||| |||||||| ||| ||||| |||||||| ||||| ||||| Sbjct 66308 TTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAATTTTA 66249 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || ||||| || | ||| |||| || || || | || || || || || Sbjct 66248 GCTTTTACATTTTCAATTGTATC---CGATGGCTCAACCTCCAAGGTTATGGTTTTTCCA 66192 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || |||||||||||| Sbjct 66191 GTGAGTGTCTTCACAAATATCTGCATT 66165 Score = 111 bits (122), Expect = 4e-19 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || || || || | || || || || ||||||| |||| Sbjct 66824 TGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTGT 66765 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 ||||| || ||||| || |||||||| ||||| ||| ||||| || ||||||||| Sbjct 66764 TTTCCAGCAAAGATGAGTCGCTGTTGG---TCTGGAGGGATGCCTTCCTTGTCCTGGATT 66708 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || ||||| || || || || | ||| | ||| ||||| | || || ||||| || Sbjct 66707 TTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCT 66648 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| Sbjct 66647 GTCAGTGTTTTCACAAAAATTTGCAT 66622 >SEQ58356 Length=38410 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||||| | ||||| || ||||| | ||||| || || ||| Sbjct 35076 TCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 35135 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || ||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 35136 ATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTT 35195 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| |||| | || || ||||| ||||| || ||||| || || || || ||| Sbjct 35196 TCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACG 35255 Query 288463 AATATCTGCATT 288474 |||||||||||| Sbjct 35256 AATATCTGCATT 35267 >seq4618 Length=10119 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | || ||||||||||||||| ||||| | | Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| || || ||||| || | ||| || |||| Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || || ||||| || || || ||||| || | || | || ||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||||| || ||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | | Sbjct 656 CCACCCCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 597 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||| Sbjct 596 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 537 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || || ||||| || || || ||||| || | || | || ||| Sbjct 536 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACT 477 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||||| || ||||| Sbjct 476 TCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| |||||||||||| || ||||| | | Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| | || || || || ||||| || | ||| || ||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTG---GTCTGGC 156680 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||| || || ||||| || || || ||||| |||| || | |||| Sbjct 156679 GGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 156620 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || || ||||| || || |||||||| Sbjct 156619 ACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >SEQ37497 Length=345 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||||||||| ||||| | ||| ||||| || ||||| | ||||| || || || || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || | ||| || |||||| || ||||| || || ||||| || || || ||||| Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || | || ||||| || ||||| || || || |||| ||||||||||| Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 288466 ATCTGCAT 288473 || ||||| Sbjct 165 ATTTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178639337248802