Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 152 5e-32 seq2773 116 4e-21 SEQ17521 111 2e-19 SEQ58356 107 2e-18 seq2744 100 3e-16 seq5513 87.8 2e-12 seq618 84.2 2e-11 >SEQ21942 Length=42535 Score = 152 bits (168), Expect = 5e-32 Identities = 368/551 (67%), Gaps = 22/551 (4%) Strand=Plus/Plus Query 27955 TTTCCTCGAAAACAACAAGCGCTTTGATAAACA---TCCCGAGAAAATTGTGGCCGCCTA 28011 ||| || || || ||||||| |||| |||||| | | | |||| | || | || || Sbjct 34555 TTTTCTAGAGAAAAACAAGC-CTTT--TAAACAAACTTCAGGGAAAGTCGTCGGAGCTTA 34611 Query 28012 TTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCAA 28071 ||| || |||||||| || || | | | || || || || || || ||| || || Sbjct 34612 TTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCCGAA 34671 Query 28072 CCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGC 28131 || | || | || ||||| || | || || || ||||| ||||| || |||||| Sbjct 34672 TCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGACAG 34731 Query 28132 CCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGA 28191 | || | || |||||| | || |||| || || ||| |||||| | || Sbjct 34732 TTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGAGAGGA 34791 Query 28192 CTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTC 28251 |||||| || | |||||||| || ||||| || | || || || || ||||| | || Sbjct 34792 CTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGTTTGTC 34851 Query 28252 TACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAA 28311 | |||||||| || ||||||||||||||||| ||| ||||| | ||| ||| | Sbjct 34852 CTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAAAACAAGCTAG 34911 Query 28312 TCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTCTTTCA 28371 || | ||||||| || | || ||||| |||||||| || | || ||||||| | Sbjct 34912 ACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATCCATTCT---A 34968 Query 28372 CATGCACGACGCGACCGTGCGCCAAACGTTCATCGATT----CCGTC-GTG---GACTTT 28423 | | || | | || ||| |||| || | || ||| ||||| Sbjct 34969 CTTCTTTGATGATAAGGT-----AAAAAGAGATCGTTTTGTGGCATCAGTGAAAGACTTC 35023 Query 28424 CTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAA 28483 || | || ||||| ||||||||||| || ||||| ||||||||||| || || || ||| Sbjct 35024 CTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAA 35083 Query 28484 GGAGCCAATCC 28494 || || ||||| Sbjct 35084 GGTGCTAATCC 35094 >seq2773 Length=85211 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| || || || || || || | | || ||||||||||||||||| || | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || ||||| || | |||| |||||||| || || ||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | ||||| | ||| | || || | | ||| || Sbjct 66272 ATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAAC 66214 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||| || || || ||||| |||||||| Sbjct 66213 CTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| ||| | || | | ||||| ||||||||||||||||| | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | | || || || || ||||||||||| Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| |||| | ||| | || || | | ||| || Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| ||||| || |||||||| ||||| || ||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| || || || || || || | | || ||||||||||||||||| || | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || |||||||| || | | |||| || ||||||||||| ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| ||| | | || | || || | | || || Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| ||||| |||||||| ||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| || ||||| || | | || || ||||||||||||||||| Sbjct 67533 GCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 67474 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || |||||||| || | | |||| || ||||||||||| ||||| Sbjct 67473 TAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 67414 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | || | || || | | || || Sbjct 67413 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTAC 67354 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 67353 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | ||| | || | | ||||| ||||||||||||||||| Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || ||||| || || | | |||| || ||||||||||| ||||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| ||| | | || | || || | | || || Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66897 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| || ||||| Sbjct 66896 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| || | || | | ||||| |||||||| |||||||| | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || ||||| || || | | |||| || ||||||||||| ||||| Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| ||| | | || | ||||| | | || || Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 67125 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| |||||||| ||||| Sbjct 67124 TCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 >SEQ17521 Length=26855 Score = 111 bits (122), Expect = 2e-19 Identities = 282/428 (66%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| || |||||||| || || | || |||||||| |||| ||| ||| || Sbjct 3656 TGGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAAT 3597 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 |||||||||||||| |||||||| ||||| || ||||| | ||| || ||||| |||| Sbjct 3596 GGTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCC 3537 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTG---CGCTCGAATGTCGTCCTTCAACGCCTGCCAA 153203 | | || |||||| || | || || ||| || | || || | || |||| Sbjct 3536 AGTAGCAGAGAATTACGAATTCCATGTTTAGCT---ATTTTTTCTTTAAGAGCAACCCAA 3480 Query 153204 TCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCG 153263 ||||| || | | || ||| |||||||| || | || || | ||| | || | Sbjct 3479 TCCCAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACA 3420 Query 153264 GGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG 153323 ||||| || || | | ||| || || || | || | ||| |||||||| || Sbjct 3419 GGACTACCTTCATATGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCC 3360 Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTC 153383 | || || || || || || || || |||| || | | |||| ||| || Sbjct 3359 AAAGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTT 3300 Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 || || || ||||| |||||||||||| || || | ||| |||| || | || || Sbjct 3299 TCATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATT 3240 Query 153444 GGTCGATG 153451 |||| ||| Sbjct 3239 GGTCTATG 3232 >SEQ58356 Length=38410 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | ||| || | ||| | | |||||||| ||||| ||||||||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || |||||||| | | |||| | ||| || || ||||| || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| |||||| ||||| | ||| | || |||| | |||||| Sbjct 35160 ATACCCTCTTTATCT-TGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCAC 35218 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||| || || || ||||| || || |||||||| Sbjct 35219 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2744 Length=156805 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || || ||||| | | || || ||||| ||||||||||| Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || ||||| | | |||| || | ||| ||||| || || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| |||| | |||| | ||| | ||||| | | || || Sbjct 156676 ATACCCTCTTTGTCT-TGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTAC 156618 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| ||||| || || |||||||||||||||||| Sbjct 156617 CTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 >seq5513 Length=124375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 124740 CGGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAAT 124799 ||| |||||||| | || ||||| |||||||| ||||||||||||||||||||||| Sbjct 11116 CGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAAAT 11057 Query 124800 TATGCGATGGCAGCCCGGCGACGATCC-GCTAACGGACCACAAACGATGGGCGCCTCAGT 124858 ||| ||||| | ||||||||||| ||| ||||| || | ||||| ||||| | Sbjct 11056 CATGAGATGGGTGGAAGGCGACGATCCTGCT-GTAGACCATCAAAGGTGGGCACCTCAAT 10998 Query 124859 GT 124860 || Sbjct 10997 GT 10996 >seq618 Length=235165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 ||||||| | |||||||| || || ||||| | |||| |||| || || ||||| | Sbjct 145356 TGGCCTCAATGTTGCCCAGATCTCCTACGTGTCTGACGGATGCGTCAGGGGCACCGTGCT 145415 Query 57359 C--GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCC 57416 | | |||||| || || |||||| |||||||||||||| ||||| || |||| || Sbjct 145416 CCTGTTGCCGG--GGATTGAAGTGCGGCCCCGCCGACGTGCAACCGTTTGTGTTGTCTCC 145473 Query 57417 GAACTCGTGAACGTGAAATCCGTG 57440 ||||| || | ||| || || || Sbjct 145474 AAACTCATGGATGTGGAACCCATG 145497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495845793918480