Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 205 9e-48 seq2594 140 3e-28 seq1106 140 3e-28 seq2773 132 5e-26 SEQ16274 127 2e-24 SEQ10937 127 2e-24 SEQ58356 111 1e-19 seq1150 109 5e-19 seq2744 100 3e-16 >SEQ21942 Length=42535 Score = 205 bits (226), Expect = 9e-48 Identities = 341/490 (70%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381 |||||||| |||||||| || |||| | | | || || | || ||||| ||| | ||| Sbjct 34610 TATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCCG 34669 Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441 || || | ||| | || ||||| || | || || || ||||| ||||| || |||||| Sbjct 34670 AATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGAC 34729 Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCC 22501 ||||| | ||||| ||| | || |||||||| || ||| | ||| Sbjct 34730 AGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGAGAG 34789 Query 22502 GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTG 22561 || ||||| || | || ||||| || ||||| || |||||||||| || || || || Sbjct 34790 GACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGTTTG 34849 Query 22562 TCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCG 22621 || || ||||||||||| ||||||||||||||||| ||| ||||| | | ||| ||| Sbjct 34850 TCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAAAACAAGCT 34909 Query 22622 AATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTA- 22680 | ||| |||| || || | |||| ||||| || ||||| ||| | ||||| || || Sbjct 34910 AGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATCCATTCTAC 34969 Query 22681 TCATATGCACGACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGAT 22740 | | || | || ||| ||| | ||| | | || ||| |||| | | Sbjct 34970 TTCTTTG-ATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTGAAAGACTTCCTCCA 35028 Query 22741 CACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGC 22800 || ||||| ||||| ||||| || || |||||||||||||| || || || || || || Sbjct 35029 AACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGGTGC 35088 Query 22801 GAATCCTAAC 22810 ||||||||| Sbjct 35089 TAATCCTAAC 35098 >seq2594 Length=155094 Score = 140 bits (154), Expect = 3e-28 Identities = 147/191 (77%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 30523 CGGGTTCGATTCCCGGGTCGGGCAAATTATTACTGGGTTTTTAAATAAAATCTCAGTAGT 30582 |||||||||||||||||||||||||| | |||||||||||| ||| ||||||||| Sbjct 115762 CGGGTTCGATTCCCGGGTCGGGCAAAGTGTTACTGGGTTTT---CCAAATTCTCAGTAGC 115706 Query 30583 AGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTATTACATGGG 30642 ||||||| ||||| ||||||| ||| | | ||||||||| || |||||||| |||| Sbjct 115705 AGCACGGGCTCTGGCTTTGTGCCCCGTA-ACGACAATAGGCTTGCCTCCTATTACGTGGG 115647 Query 30643 ACTCATAACATATATATATAGTGAAAAGTGGGTGTTACTTCTGTGTGCACCTCTGCCTAC 30702 ||||| || || || | | |||| |||||||| | | | || |||||||||| Sbjct 115646 ACTCAAAA---ATTCATTTGGCGAAATGTGGGTGTAATAT-----TACAGCTCTGCCTAC 115595 Query 30703 CCCTTCGGGGA 30713 |||| | |||| Sbjct 115594 CCCTCCTGGGA 115584 >seq1106 Length=71547 Score = 140 bits (154), Expect = 3e-28 Identities = 147/191 (77%), Gaps = 12/191 (6%) Strand=Plus/Plus Query 30523 CGGGTTCGATTCCCGGGTCGGGCAAATTATTACTGGGTTTTTAAATAAAATCTCAGTAGT 30582 |||||||||||||||||||||||||| | |||||||||||| ||| ||||||||| Sbjct 68805 CGGGTTCGATTCCCGGGTCGGGCAAAGTGTTACTGGGTTTT---CCAAATTCTCAGTAGC 68861 Query 30583 AGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTATTACATGGG 30642 ||||||| ||||| ||||||||||| | | ||||||||| ||| |||||||| |||| Sbjct 68862 AGCACGGGCTCTGGCTTTGTGCCCGGTA-ACGACAATAGGCTTACCTCCTATTACGTGGG 68920 Query 30643 ACTCATAACATATATATATAGTGAAAAGTGGGTGTTACTTCTGTGTGCACCTCTGCCTAC 30702 ||||| || || || | |||| |||||||| | | | || |||||||||| Sbjct 68921 ACTCAAAA---ATTCATTCGGCGAAATGTGGGTGTAATAT-----TACAGCTCTGCCTAC 68972 Query 30703 CCCTTCGGGGA 30713 || |||||| Sbjct 68973 TGCTGCGGGGA 68983 >seq2773 Length=85211 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||| || || ||||| || | |||||| || |||||||| |||||||| Sbjct 66849 TCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66790 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| ||||| ||||||||||| |||| | |||||| || || ||||| Sbjct 66789 CAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 66730 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| |||||| || | | || | || || | | || || Sbjct 66729 GATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAAC 66670 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| ||||| ||||| |||||||| ||||| Sbjct 66669 TTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||| || || ||||| || | |||||| || |||||||| |||||||| Sbjct 66393 TCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66334 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || |||||||| || ||| |||| | ||||||||||||||||| Sbjct 66333 CAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGG 66274 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || |||||| ||| ||| || || | | ||| | || |||| ||| | Sbjct 66273 GATACCTTCTTTGTCC-TGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| || || || || || ||||| |||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| || | || | || |||||||||||||||||||| || Sbjct 67305 TCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGA 67246 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || || || |||||||| |||| | |||||| || || ||||| Sbjct 67245 CAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 67186 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| |||||| |||| | || | ||||||| | || || Sbjct 67185 GATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAAC 67126 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| || || ||||| |||||||| ||||| Sbjct 67125 TTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||||||||| ||||| || || || || ||| || || || || ||| Sbjct 66590 GTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCA 66531 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | || ||||| || ||||| ||||| || ||||| ||||||| ||| Sbjct 66530 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTT 66471 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| || || | ||| ||||| | ||| | ||| || || || |||||| Sbjct 66470 ACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTT 66411 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 66410 TTAACAAAGATTTGCAT 66394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || || || || | || || ||||||||||| ||||| || | || || | Sbjct 67520 CGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCA 67461 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||||||||| |||| | |||||| || || ||||| ||||| |||||| Sbjct 67460 TCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTG 67401 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| |||| | || | || || | | || ||||| | || | Sbjct 67400 TCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATG 67341 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| || ||||| |||||||| Sbjct 67340 GTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 >SEQ16274 Length=64950 Score = 127 bits (140), Expect = 2e-24 Identities = 145/191 (76%), Gaps = 14/191 (7%) Strand=Plus/Plus Query 30523 CGGGTTCGATTCCCGGGTCGGGCAAATTATTACTGGGTTTTTAAATAAAATCTCAGTAGT 30582 |||||||||||||||||||||||| | ||||||||||| || | ||||||||| Sbjct 41065 CGGGTTCGATTCCCGGGTCGGGCAG--TGCTACTGGGTTTTCCAA---ATTCTCAGTAGC 41119 Query 30583 AGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTATTACATGGG 30642 ||||||| ||||| ||||||||||| | | ||||||||| || |||||||| |||| Sbjct 41120 AGCACGGGCTCTGGCTTTGTGCCCGGTA-ACGACAATAGGCTTGCCTCCTATTACGTGGG 41178 Query 30643 ACTCATAACATATATATATAGTGAAAAGTGGGTGTTACTTCTGTGTGCACCTCTGCCTAC 30702 ||||| || || || |||||| |||||||| | | | || |||||||||| Sbjct 41179 ACTCAAAA---ATTCATTCGGTGAAATGTGGGTGTAATAT-----TACAGCTCTGCCTAC 41230 Query 30703 CCCTTCGGGGA 30713 | || |||||| Sbjct 41231 CGCTGCGGGGA 41241 >SEQ10937 Length=24146 Score = 127 bits (140), Expect = 2e-24 Identities = 152/203 (75%), Gaps = 14/203 (7%) Strand=Plus/Minus Query 30523 CGGGTTCGATTCCCGGGTCGGGCAAATTATTACTGGGTTTTTAAATAAAATCTCAGTAGT 30582 ||||||||||| |||||||||||| | |||||||||||| || | ||||||||| Sbjct 4656 CGGGTTCGATTTCCGGGTCGGGCAG--TGTTACTGGGTTTTCCAA---ATTCTCAGTAGC 4602 Query 30583 AGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTATTACATGGG 30642 ||||||| ||||| ||||||||||| | ||||||||||| || |||||||| |||| Sbjct 4601 AGCACGGGCTCTGGCTTTGTGCCCGGTA-ACGGCAATAGGCTTGCCTCCTATTACGTGGG 4543 Query 30643 ACTCATAACATATATATATAGTGAAAAGTGGGTGTTACTTCTGTGTGCACCTCTGCCTAC 30702 ||||| || || || | |||| |||||||| | | | | |||||||||| Sbjct 4542 ACTCAAAA---ATTCATTCGGCGAAATGTGGGTGTAATAT-----TATAGCTCTGCCTAC 4491 Query 30703 CCCTTCGGGGAAAAAAGGCGTGA 30725 | || |||||| | ||| |||| Sbjct 4490 CTCTGCGGGGACAGCAGGTGTGA 4468 >SEQ58356 Length=38410 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| | |||||| | ||| | |||||||| || ||||||||||| ||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| ||||||| || |||||||| || || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || | | ||| ||| ||| || | | ||| | || || | ||| || Sbjct 35160 ATACCCTCTTTAT-CTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCAC 35218 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || || || ||||| || || |||||||| Sbjct 35219 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq1150 Length=248522 Score = 109 bits (120), Expect = 5e-19 Identities = 102/128 (80%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 30523 CGGGTTCGATTCCCGGGTCGGGCAAATTATTACTGGGTTTTTAAATAAAATCTCAGTAGT 30582 |||||||||| |||||||||||||| | |||||||||||| ||| ||||||||| Sbjct 121018 CGGGTTCGATATCCGGGTCGGGCAAAGTGTTACTGGGTTTT---CCAAATTCTCAGTAGC 121074 Query 30583 AGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTATTACATGGG 30642 || |||| ||||| ||||||||||| | | ||||||||| || |||||||| | || Sbjct 121075 AGAACGGGCTCTGGCTTTGTGCCCGGTA-ACGACAATAGGCTTGCCTCCTATTACGTAGG 121133 Query 30643 ACTCATAA 30650 ||||| || Sbjct 121134 ACTCAAAA 121141 >seq2744 Length=156805 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| || |||||||| | || || |||||||| || ||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || ||||| |||| | | |||||| || || || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| ||||| ||| | | ||| | ||||| | | || || Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| || || || |||||||||||||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475101623022160