Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2773 170 5e-37 seq2744 109 1e-18 SEQ58356 93.3 1e-13 >seq2773 Length=85211 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| |||||||| ||||| ||||| ||||| | ||||||||||| || || Sbjct 66615 TCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGT 66556 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||| ||||| || || || ||||| || |||||||||||| || || Sbjct 66555 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCC 66496 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || || || ||| ||| ||||| || |||| || ||||| || || Sbjct 66495 TTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAA 66436 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| ||||||||||| ||||| ||||| Sbjct 66435 GGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTG 66397 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| |||||||| ||||||||||| ||||| | |||||||||| || || Sbjct 67299 TCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGT 67240 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| |||||||| || ||||| || ||||| ||||| ||| || || Sbjct 67239 TCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCC 67180 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| || ||| |||| || || | ||||| | | ||| || |||| Sbjct 67179 TTCCTTATCCTGGAT-TTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCA 67121 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || ||||| ||||| || ||||||||||||||||| Sbjct 67120 AAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTG 67081 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||| ||||| | ||||||||||| | || | |||||| Sbjct 67061 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCT 67002 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| |||||||| || ||||| || ||||| ||||| ||| || ||||| ||| Sbjct 67001 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 66942 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | || |||| | ||| || ||||| || || || Sbjct 66941 TGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGT 66883 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || ||||| ||||| Sbjct 66882 CTTTCCAGTAAGAGTCTTGACAAAGATTTG 66853 Score = 114 bits (126), Expect = 3e-20 Identities = 154/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || |||||||| | |||||| |||| || || | |||||||| ||||| Sbjct 66369 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCAAGCTG 66310 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || |||||||| ||||||||||| || ||| || |||||| |||||||| || Sbjct 66309 TTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAAT-TT 66251 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || ||| | || || | || || || ||||| || || || || || | Sbjct 66250 TAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAG 66191 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||| || |||||||| || || |||||| Sbjct 66190 TGAGTGTCTTCACAAATATCTG---CATTTT 66163 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || |||||||| | |||||| |||| || || | |||||||| || || Sbjct 66825 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTG 66766 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| || |||||||| ||||| ||||| ||| || ||||| ||||| || || Sbjct 66765 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TT 66707 Query 199546 TTGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | |||| | | || | || |||| | ||| || ||||| || || ||||| || | Sbjct 66706 TGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTG 66647 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | || ||||||||||||||||| Sbjct 66646 TCAGTGTTTTCACAAAAATTTG 66625 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| | ||| || || ||||| | ||||||||||| | || | ||||||||||| || Sbjct 67509 GTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTG 67450 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| || |||||||| ||||| ||||| ||| || ||||| ||||| || || Sbjct 67449 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TT 67391 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || || | || |||| | |||||| ||||| || || ||||| || | Sbjct 67390 TGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAG 67331 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| || || Sbjct 67330 TAAGAGTCTTGACAAAGATCTG 67309 >seq2744 Length=156805 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || | ||||| || || || ||||||| ||||||||||| | || | || Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| |||||||| || || ||||| || | ||||||||| || || || ||| Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | ||||||| | |||||| || | || || Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || |||||||| || Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTG 156573 >SEQ58356 Length=38410 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||| ||||| || | || |||||||| || | |||||||| | || || | ||| Sbjct 35052 CTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCA 35111 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||||||| || || || ||||| | ||| ||||| ||||| ||| || ||| Sbjct 35112 TCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTA 35171 Query 199535 TCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| |||||| || || ||| | || || | | || || || | ||||| Sbjct 35172 TCTTGAAT-TTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGAT 35230 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || || Sbjct 35231 GGTTTTCCCCGTAAGGGTTTTCACGAATATCTG 35263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177907167804653