Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 322 5e-83 SEQ58356 123 3e-23 seq2773 95.1 1e-14 seq4618 93.3 5e-14 >SEQ21942 Length=42535 Score = 322 bits (356), Expect = 5e-83 Identities = 843/1263 (67%), Gaps = 51/1263 (4%) Strand=Plus/Plus Query 98702 aaaaCAATGTGCCTTTTACA-AAACA-CACGGACAAAGTTACGGGGGCTTATTTTGTAGA 98759 ||||||| |||||||| | |||| || ||| |||| || ||||||||||| || Sbjct 34566 AAAACAA---GCCTTTTAAACAAACTTCAGGGA--AAGTCGTCGGAGCTTATTTTGTGGA 34620 Query 98760 ATGGGGTGTTTACGATCGCAAATTTCCAGCAGATAAAGTGCCTATCCCCAATTTGACACA 98819 |||||||||||| | | ||||| |||| |||||| || || || || ||| | ||||| Sbjct 34621 GTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCCGAATCTTACACA 34680 Query 98820 CCTTTTGTATGGTTTTATCCCCATTTGCGGAGGCGACGGTATAAACGACAGTCTAAAACA 98879 ||| | || || ||||||||||| || || || ||||| || ||||||||| | ||| | Sbjct 34681 TCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGACAGTTTGAAAGA 34740 Query 98880 AGTGCCGGGATCTTTTGAGACGTTACAAAAATCGTGCGATAAGAGAGATGATTTCAAGGT 98939 | | ||| ||| | | || ||| ||| ||| | |||| || ||||| || Sbjct 34741 AATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGAGAGGACTTCAAAGT 34800 Query 98940 GAGCATCCACGATATTTACGGTGCTCTACAGAAACCACAACAGGGTGTCTCCGATTATAA 98999 |||||||| || | ||| |||| |||||||| ||||| | ||| | || Sbjct 34801 TTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGTTTGTCCTCCTGGAA 34860 Query 99000 CGAGCCTTACCGTGGCAATTTCGGACAGCTTATGGCCATACGTAAACAC---AACCCACA 99056 ||| |||||| ||||| || ||||| || ||| | || ||||| | || | Sbjct 34861 CGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTA---AAACAAGCTAGACCTGA 34917 Query 99057 TCTAAAAATCCTACCCAGTATCGGTGGTTGGACTCTTAGC-GACCCCTTCTATTTTTTCG 99115 ||| || | || || ||||| || ||||| || || || || ||||| || || | Sbjct 34918 TCTGAAGGTTCTTCCATCAATCGGGGGCTGGACA-TTGGCAGATCCATTCTACTTCTTTG 34976 Query 99116 CCGATGA--TTACAAGCGCAAAGTGTTCGTAGACTCGGTTCGTGAATTCCTACAGGTGTG 99173 ||| | | | ||| | | || || || | || || || ||||| || || Sbjct 34977 ATGATAAGGTAAAAAGAG-ATCGTTTT-GTGGCATCAGTGAAAGACTTCCTCCAAACTTG 35034 Query 99174 GAAATTTTTCGACGGTGTAGACATCGACTGGGAGTTTCCTGGCGGAAAGGGGGCCAACCC 99233 |||||| ||||||||||| ||||| || |||||||| ||||| ||||| || || || || Sbjct 35035 GAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGGTGCTAATCC 35094 Query 99234 TGAAGTAGGAAATCCTAATGAGGACGGAAACACTTATGTCACACTTCTGCAAGAGCTTCG 99293 | | | || || ||||| ||| | ||||||| || || ||||| | || Sbjct 35095 TAACCTCGGTGGACCAAATGA---CGGTGAAGTTTATGTCCAGCTGATGAAAGAGTTACG 35151 Query 99294 TTTGATGCTTGACGA---ATTGGGTGTGGCC---AATAAACGTGTTTACGAACTGACAAG 99347 | ||||| |||| || | | || || ||| || ||||||||| Sbjct 35152 TGAAATGCTGAACGAGCTATCCACGGAGACCGGTAAGAAA------TATGAACTGACATC 35205 Query 99348 TGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGTCGATTACTCTACAGC-CAGTCAAT 99406 || | | || |||| ||||| ||| | || || |||||| | ||| ||| |||| Sbjct 35206 CGCTATTAGTGCTGGTTGGGATAAGATCCAAGTAGTTGATTACAGGAAAGCTCAG-CAAT 35264 Query 99407 ATTTGGACCATGTGTTTTTAATGAGTTACGATTTTAAAGGCGCCTGGTCCAACACCGACT 99466 || |||| ||| | ||||||||||||||||| |||||||| || ||||| || | ||| Sbjct 35265 ATATGGATCATATCTTTTTAATGAGTTACGACTTTAAAGGAGCGTGGTCAAATGAC-ACT 35323 Query 99467 -TGGGTCATCAAACACCATTGTATGCACCATCGTGGAACTCCGAAGAGAGATACACAACC 99525 | || ||||||||||| || ||||||||| | ||||| | |||| | |||||||| Sbjct 35324 CTTGGACATCAAACACCGTTATATGCACCAGCATGGAATCCAAAAGAAACCTACACAACT 35383 Query 99526 GATTATGCGGTTAAACAGCTATTAAAGAAAAAAGTGCCTTCTCACAAGATTGTAGTGGGA 99585 || | || |||||| | || ||| || ||| || | |||||| |||| || Sbjct 35384 GACTTTGGAGTTAAAAATCTCTTAGCCCAAGGAGTCAACCCTAAGAAGATTATAGTTGGT 35443 Query 99586 GTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCATGACTACAAAAATAATAACGTTTTT 99645 || || |||||||| | || |||| |||||| || |||||| | ||||||| ||| Sbjct 35444 GTAGCGATGTACGGTCGTGGTTGGACTGGAGTCCAAAACTACACAGATAATAATCCTTTC 35503 Query 99646 ACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTGGGAAAACGGTGTTGTTGATTATAGG 99705 || || || ||||| || || ||||| || ||| | | ||||| || || || || Sbjct 35504 ACTGGAGTAGCCACAGGTCCTTGTAAAGGGACGTGGCAGGATGGTGTGGTCGACTACAGA 35563 Query 99706 CAGGTCGAAGAGCTCAAA----AACA-ACAATTACACATACGCATACGACAAAGTGGCCG 99760 | | | | | | ||| | || || | | | || || || ||||| Sbjct 35564 GAAATTGCAAA--TGAAATTGCAGCAGGGAAATGGGAGTTCCATTATGATAATGTGGCAC 35621 Query 99761 AGGCGGCATATATTTACGGTGGCGCCGACCAGGCGTTGAATTTAATTTCTTACGACGACT 99820 | ||| ||||| | | | || ||| |||| | || ||||| | |||||| | Sbjct 35622 AAGCGCCATATGTCTTCCGTCCTGCC--ACAGG----GGATCTAATTACATACGACAATC 35675 Query 99821 CATCGTCTGTACTAGCAAAAGGTAATTACGTTTTACAAAACAATCTCGGAGGTTTATTTG 99880 || || || ||| ||||| || || ||| | | || || || |||||||| |||| Sbjct 35676 CAAGATCCGTTATAGAGAAAGGAAAGTATGTTAGAAATAATAAGCTTGGAGGTTTGTTTG 35735 Query 99881 CTTGGGAAATCGATGCCGACAACGGTGACTTGTTAAACGCCATGAACACAGGTTTGGGTA 99940 | |||||||| ||||| || | || ||||| || || || ||||| | ||| | || | Sbjct 35736 CGTGGGAAATAGATGCAGATACTGGGGACTTATTGAATGCTATGAATATGGGTCTTGGGA 35795 Query 99941 ACA 99943 ||| Sbjct 35796 ACA 35798 >SEQ58356 Length=38410 Score = 123 bits (136), Expect = 3e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 ||| ||| ||||||||||| | |||||| |||||||||||| |||||| || ||||||| Sbjct 35032 ATTTTTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGT 35091 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||||| ||||| | || || ||||| || || || || ||||| || ||||| | Sbjct 35092 AGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGAT 35151 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTC 46537 | | || | | ||| || | | ||| || | | || | | | | || ||| Sbjct 35152 CCGGTGGAATACCCTCTTTAT-CTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAG 35210 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | ||||| || | ||||||||||| ||||| || ||||| || || || |||||| Sbjct 35211 GCCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq2773 Length=85211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| ||||||||||| || || || ||| | || || || ||||| || || || Sbjct 67269 CTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAA 67210 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | || ||||| ||| ||| || |||| | Sbjct 67209 GATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATT 67150 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| || ||||| |||||||| || ||||| || Sbjct 67149 CTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCAC 67090 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 67089 AAAAATTTGCAT 67078 >seq4618 Length=10119 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 46351 TGTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTG 46410 |||||||| || ||||| || || || | || |||| ||| | ||| || ||||| Sbjct 670 TGTACTAT--TAATTGCCACCCCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTG 613 Query 46411 GATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG 46470 |||||||||||| || || ||||| | || || |||||||||||||| || || | | Sbjct 612 GATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCT 553 Query 46471 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGT 46530 ||||||||| | || | | ||| ||||| || || ||| | | | | || Sbjct 552 CTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGT 493 Query 46531 GTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 ||| | || || || | ||||| |||||||| |||| || || || || ||||| Sbjct 492 GTCTGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTG 433 Query 46591 CAT 46593 ||| Sbjct 432 CAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564763889428680