Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 239 3e-58 seq2773 96.9 2e-15 >SEQ21942 Length=42535 Score = 239 bits (264), Expect = 3e-58 Identities = 793/1217 (65%), Gaps = 41/1217 (3%) Strand=Plus/Minus Query 5820 CCCAA-ACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGC 5878 ||||| ||| | ||||| ||||| || | || || | || || |||||||||||||| Sbjct 35794 CCCAAGACCCATATTCATAGCATTCAATAAGTCCCCAGTATCTGCATCTATTTCCCACGC 35735 Query 5879 AAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATC 5938 ||| ||||| || | || || | |||||||| ||||| ||| || ||| Sbjct 35734 AAACAAACCTCCAAGCTTATTATTTCTAACATACTTTCCTTTCTCTATAACGGATCTTGG 35675 Query 5939 GTTGTCGTACGTAACTAAATCATTATTATC------GTAGACGTACGGAGATTGTGCAAT 5992 |||||||| |||| || ||| | | | |||| || || | |||||| | Sbjct 35674 ATTGTCGTATGTAATTAGATCCCCTGTGGCAGGACGGAAGACATATGGCGCTTGTGCCAC 35615 Query 5993 GTTATCATAGAATTGTACAC---TTTC---GTCGTACCT--ATTTACAATATCTTTATAA 6044 |||||||| || | || | |||| | | | | |||| |||| ||| | || Sbjct 35614 ATTATCATA--ATGGAACTCCCATTTCCCTGCTGCAATTTCATTTGCAATTTCTCTGTAG 35557 Query 6045 TCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGA 6104 |||| || || | ||| || |||||| ||| | | |||| ||| || || ||| Sbjct 35556 TCGACCACACCATCCTGCCACGTCCCTTTACAAGGACCTGTGGCTACTCCAGTGAAAGGA 35497 Query 6105 TTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACT 6164 ||||| | | | || || || |||| || || || ||||| || ||||| ||| Sbjct 35496 TTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCGTACATCGCTACACCAACT 35437 Query 6165 ACTAAT-TTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGT 6223 | |||| || | | | ||| ||| ||| | | |||| |||| | ||||| Sbjct 35436 A-TAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGT 35378 Query 6224 GTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTC 6283 ||| |||| || | ||| | || || || | |||||||||| || | | | || Sbjct 35377 GTAGGTTTCTTTTGGATTCCATGCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTGTC 35318 Query 6284 CATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTG 6343 | ||||| || |||||||| ||||| |||||| ||| |||| ||| | ||| | || Sbjct 35317 ATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGCTG 35258 Query 6344 CGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAG 6403 || | | ||||| || || | ||| || || |||| |||| |||||| || || Sbjct 35257 AGCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAG 35198 Query 6404 TTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAA 6463 || || ||||| ||| | | | ||| |||||||| |||||||| || | Sbjct 35197 TTCATATTTCTTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCAT 35138 Query 6464 AAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACG----GGTTGGCAC 6519 || ||| || | || || | ||| ||| | | || |||| Sbjct 35137 CAGCTGGACATAAACTTCACCGTCATTTG-------GTCCACCGAGGTTAGGATTAGCAC 35085 Query 6520 CTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCA 6579 |||| || || || ||||||||||| ||||| || |||||||| |||||||| |||| | Sbjct 35084 CTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGA 35025 Query 6580 AAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAA 6639 || || ||| | ||||| || || |||| | || | || ||| | Sbjct 35024 GGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAGAAGTAGA 34965 Query 6640 ACGGATC-GCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGG 6698 | ||||| || || ||||| || || || ||||| | | | | ||| || | | | Sbjct 34964 ATGGATCTGCCAAT-GTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGG--TCTAG 34908 Query 6699 C--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGA 6756 | | || | | ||| | ||||||||||| |||||||| |||||||| ||| | Sbjct 34907 CTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACA 34848 Query 6757 CACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTT 6816 ||| || ||||||||||| | ||| |||| || || || | |||||||| || | Sbjct 34847 AACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCT 34788 Query 6817 TTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAGC 6875 ||| ||| ||| ||| |||||| || | |||| || | |||| || | || | Sbjct 34787 CTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCG-ATTTCTT--TCAAAC 34731 Query 6876 GCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGA 6935 ||||| | || || |||||||| || || ||||| ||||| | | |||||||||| Sbjct 34730 TG-TCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGA 34672 Query 6936 TTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAG 6995 || |||||||| | || || | || ||| |||| |||||||||||| |||||||| Sbjct 34671 TTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAA 34612 Query 6996 TAAGCGCCCACAACATT 7012 ||||| || || || || Sbjct 34611 TAAGCTCCGACGACTTT 34595 >seq2773 Length=85211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || ||| ||||| | ||| | ||| || ||||||||| ||||||||| || || || || Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | || |||| |||| |||||| || |||| || | ||||| || || | Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||| ||||| ||||| ||| | || | | ||| |||| ||| Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || || || || | ||| || || ||||||||||| Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||||||||| | || | ||| |||||||| ||||| || || | | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| ||| || || |||| || | ||||| || || | || Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || ||||| ||| | || | | |||||| | ||| || Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 67125 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || ||||||| ||||| || || || ||||| Sbjct 67124 TCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347085277873847