Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4618 149 6e-31 SEQ58356 129 6e-25 seq2744 123 2e-23 SEQ58105 118 1e-21 SEQ37497 118 1e-21 seq2773 109 5e-19 >seq4618 Length=10119 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | ||||| | ||||||||||| || || | ||||| Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | |||||||||||||| || || | ||||| ||| |||||||| Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 381 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 382 ATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGG 428 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| | || || ||| | | Sbjct 430 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACTATCACTCTTGAAGTTGAGCCATCA 489 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | ||||| | ||||||||||| || || | ||||| Sbjct 490 GACACCATCGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 549 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 550 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 609 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||| | || || |||||||| ||| | ||||| || ||| Sbjct 610 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGGGGTGGC 657 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 |||||||||||||| | || || ||| | | |||| | | ||| |||| | ||| Sbjct 1 GGCAAAACCATCACTCTTGAAGTTGAGCCATCAGACACCATTGAAAATGTTAAGGCTAAA 60 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||||||||| || || | ||||| ||| ||||||| | || ||||| ||| Sbjct 61 ATCCAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAG 120 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | ||||| ||| |||||||| ||||| || ||| | || || |||||| Sbjct 121 CTTGAAGATGGCCGCACACTCTCGGACTACAATATCCAGAAAGAATCCACACTCCATTTG 180 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 || ||| | |||||||| || Sbjct 181 GTACTGAGATTGAGAGGTGG 200 >SEQ58356 Length=38410 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| |||||||| ||||| || ||||| |||||||||||| |||| || ||||| Sbjct 35270 AACAATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 35211 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | ||| | |||| |||||| | || |||||||| ||||| | || Sbjct 35210 CTCCGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGA 35151 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | || | || || ||||||||||| || | ||||| | |||||| Sbjct 35150 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 35091 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || ||||| | || ||||| | ||| || | || ||||| || Sbjct 35090 CAATATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGG 35040 >seq2744 Length=156805 Score = 123 bits (136), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| | || ||||| || || ||||| || ||||| |||||||| || ||| | || || Sbjct 156561 TTTCAGAACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTA 156620 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | | |||| | ||| | || | ||||| | ||||||||||| | |||| Sbjct 156621 GAACCTTCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTA-TCCC 156679 Query 38355 GCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 ||| ||||| ||| |||| || | || || || ||||| || || | || || ||| Sbjct 156680 GCCAGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTC 156739 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 156740 TGACTACAACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 156796 >SEQ58105 Length=99015 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || ||||| || || || ||||||||||| || |||||||| || || || | Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCT 17260 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||| || | || |||||||| || || || | ||||| || || || || | Sbjct 17259 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATG 17200 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | || || || || || || |||||| || ||||| | || ||||| || | Sbjct 17199 CTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTG 17140 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| | ||| || || |||| ||||| || || || || || Sbjct 17139 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 17097 >SEQ37497 Length=345 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 158 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 217 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | ||||| | ||||||||||| || || | ||||| Sbjct 218 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 277 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||||| || ||||||||||| || || | ||||| ||| |||||||| Sbjct 278 CAGAGGCTCATTTTTGCCGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 337 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 338 ATCCAAAA 345 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | ||||| | ||||||||||| || || | ||||| ||| ||||||| | | Sbjct 6 TTAAGGCCAAAATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTG 65 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| ||||| || || | || || ||| |||||||| |||||||| ||| | | Sbjct 66 CCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAATATCCAAAAAGAATCCA 125 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | || |||||||| ||| | |||||||| || Sbjct 126 CACTCCATTTGGTACTGAGATTGAGAGGTGG 156 >seq2773 Length=85211 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || || || || ||| | || || ||| | | Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | || | ||||||| |||||||| || || || | |||| Sbjct 66453 AGATACTATCGAAAACG-TAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACC 66511 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || |||||||||| || ||||| || ||||| || | || ||||| ||||||| Sbjct 66512 AGCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACA 66571 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| || | || || || | || |||||| || |||| || Sbjct 66572 ACATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGG 66620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| || || || | || || || | | Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||||| ||||||| ||||| || || || || | |||||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || ||||| || || || | ||| || || || |||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | ||||| || ||||| | || || |||| || Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || |||||||| ||||| || | || || || | | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| || || || || || || | |||||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || || ||||| || | ||| ||||| |||||||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| || |||| || || | || |||||| || |||| || Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 67304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || || || || || ||||| || | || || || | | Sbjct 66849 AATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTC 66908 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||||| ||||||| ||||| || || || || | ||||| Sbjct 66909 AGATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 66968 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || || || || ||||| || | ||| |||||| |||||||| Sbjct 66969 ACAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAA 67028 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| || | || || || | || || ||| || |||| || Sbjct 67029 CATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGG 67076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||||||| ||||| || || || || | ||||||||||| ||||| | || Sbjct 67384 AAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAGCGACTCATCTTTGCT 67443 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| ||||| || | ||| ||||| ||||||||||| ||||| ||| | || Sbjct 67444 GGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAACATTCAAAAAGAATCCACT 67503 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || || | ||| | |||| ||| Sbjct 67504 TTGCACTTAGTATTACGTCTCCGAGGAGGC 67533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499752911186560