Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 170 2e-37 >SEQ17521 Length=26855 Score = 170 bits (188), Expect = 2e-37 Identities = 1038/1643 (63%), Gaps = 48/1643 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| | ||||| || || || ||||| ||||| ||||| |||||||| | Sbjct 2239 CCACAACATATGCTAATGCGTGTAGCTATTGGTATACATGGAGAAGACATTGATTCAGCA 2298 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | | || ||| | |||| | |||| |||| ||||| | || || | || Sbjct 2299 ATTAACACCTACAATTTATTGTCTGAGAAGTAT-TTCACTCACGCCAGTCCTACTTTATT 2357 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGGAGG 111789 |||| ||| |||||||| ||| |||| ||||||| |||||| | | || || | Sbjct 2358 TTCTGCTGCTACTCCAAGACCTCAATTGTCATCTTGTTTC-TTATTGGCCATGAAAGATG 2416 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || | || || || | |||||| | |||||||| || || || | || | Sbjct 2417 ACAGTATTGAGGGAATATATGACACTCTGAAACAATGTGCCTTGATATCTAAATCTGCAG 2476 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACA 111908 |||| || ||| | || | || | || |||| || | || | |||| || ||| Sbjct 2477 GTGGCATTGGGCTTCATGTTCACTGTATCCGAGCTAA-AGGTACATGTATAGCTGGCACA 2535 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 |||||| |||| |||| || | |||||| | | |||| |||| |||||| | ||| Sbjct 2536 AATGGTGTATCAAATGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCAGATAT 2595 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 ||| | |||| ||| ||||| || ||| | | || || ||| | || |||||| Sbjct 2596 GTAGATCAAGGTGGTAACAAGCGTC-CAGGGG--CATTTGCTGTATATTTAGAACCATGG 2652 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 || | ||| | | ||||| | || || || ||| | || || | || Sbjct 2653 CATTCAGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGTAAAGAAGAAGTTCGA 2712 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | || | || | ||| | ||||| |||||| | || ||||| |||||||| | Sbjct 2713 GCTAGGGAATTGTTTTATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTGAAAAA 2772 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || |||||| | | | ||||| | | || ||| | | ||| ||| Sbjct 2773 AATGAAAATTGGAGTTTGATGTGTCCCCATGACTGTCCTGGTTTGGCAGATTGTTGGGGA 2832 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||||||||| || |||||| ||| ||| |||| | | | | Sbjct 2833 GAAGAGTTTGAAGCCCTTTATGAAAAGTATGAGAATGAAAAAAGATTTGTTAAA-CAA-- 2889 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || ||| | | | ||||| |||||| | | | ||| || || || || ||| Sbjct 2890 GTAAAAGCACAAGTTTTATGGAAGGCTATTGTAGAAGCACAAGTTGAAACAGGCACTCCA 2949 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||| | |||||||| | |||||| |||||||||||| || ||| | || || Sbjct 2950 TTCATGTTATACAAAGATTCATGTAACAGAAAGAGTAATCAGAAAAATCTAGGAACAATT 3009 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || || || || ||||||||||| | |||| ||| |||||| || || Sbjct 3010 AAATGTAGTAATCTATGTACAGAAATAGTAGAATACACATCAGTAGATGAAGTAGCAGTA 3069 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGA 112498 ||||| | || || || ||| | | || ||| || || | || | ||| | Sbjct 3070 TGTAATTTAGCTTCTATTGCTTTGAATATGTTTGTAAATGATGATAGAACGTACA----A 3125 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 || |||||| | | |||||||| |||| | | || |||||||||| | | |||| || Sbjct 3126 TTTTGAAAAGTTAAAAGAAGTTACAAAAATTATAACCCAAAACCTAAATAAAATTATAGA 3185 Query 112559 TAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | |||| ||| || ||| ||| ||| || || |||||| |||| | ||||| | Sbjct 3186 TGTCAATTATTATCCAGTTCCAGA-AGCTAAAAACTCCAATATGCGACATAGACCAATAG 3244 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 112677 || | || ||||||||| | || |||| || | || ||| || | | ||| | Sbjct 3245 GTATTGGAGTCCAAGGTTTAGCTGATGCCTTTGTGCTGATGCGCTACCCTTATGAAAGTG 3304 Query 112678 ACGAAGCGAAG----GAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 | |||| | ||| ||| | ||||||||||| || ||| ||| ||| | Sbjct 3305 AAAAAGCATTGTTGTTAAACCAA----CAGATATTTGAGACTATCTATTACGGAGCTTTG 3360 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || || || | || || || ||| || || ||| | | ||| ||| ||| Sbjct 3361 GAAGCTAGCTGTGAATTAGCGGAGAAAGAGGGAGTTTATAGTTCATATGAAGGTAGTCCT 3420 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 112852 | | |||||| | | ||||||||||||| |||| || | ||| || || || Sbjct 3421 GTTAGCCAAGGGATTTTGCAATTTGATATGT-GGAATAAGACGCCCACTGATCTCTGGGA 3479 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 |||| ||||| || ||| || | | || ||||||| ||| | |||| Sbjct 3480 TTGGGTTGCTCTTAAAGAAAAAATAGCTAAACATGGAATTCGTAATTCTCTGCTACTGGC 3539 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || |||||||| || || || ||||| || | || |||||||||| ||||||||| | Sbjct 3540 GCCTATGCCAACGGCATCTACGGCACAGATACTTGGCAATAATGAATCCTTTGAACCATT 3599 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 || | || || || | ||| || | | ||||| ||| |||| ||| | || Sbjct 3600 TACTTCAAATATATACCAAAGACGAGTATTATCAGGAGAATTTCAAGTTGTGAACCATCA 3659 Query 113033 TCTCGTG-GA----TGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 113087 ||| || || ||| ||||| ||||| | ||| | | || ||||| |||| Sbjct 3660 TCTTTTGAGAGATTTGA-CTCAAGCAGATT----TGTGGGACGATGACATGAAAAATCTT 3714 Query 113088 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAG 113147 || | | |||||| |||| ||||||| |||||| | || |||| | Sbjct 3715 ATTCTTCATAATAATGGTTCAGTTCAGAATATTGAATCTATTCCCAAAGATATTAGAGAT 3774 Query 113148 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 ||||| ||||| |||||||| |||| | ||| | ||||| || ||| | Sbjct 3775 TTGTATAAGACAGTATGGGAAATTTCTGTGAAAACTACTATTCAGATGGCTGCTGATAGA 3834 Query 113208 GGTCGCTTCATTGATCAAAGTCA 113230 ||| || || || |||||||| Sbjct 3835 GGTGCATTTATAGACCAAAGTCA 3857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620221294514480