Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 168 8e-37 >SEQ17521 Length=26855 Score = 168 bits (186), Expect = 8e-37 Identities = 877/1381 (64%), Gaps = 44/1381 (3%) Strand=Plus/Minus Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 ||||||||| |||||||||| || | || ||||| || || || |||||||| || ||| Sbjct 3596 GGTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCC 3537 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072 | | ||| ||||||| || | || || ||| || ||| || |||| || Sbjct 3536 AGTAGCAGAGAATTACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCC 3477 Query 106073 TAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 || || | | || || |||| ||||||||||||| | | ||||||| | Sbjct 3476 CAGA-GATCAGTGGGCGTCTTATTCC-ACATATCAAATTGCAAAATCCCTTGGCTAACAG 3419 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 106190 || ||| ||| ||| ||| || | || || ||||||||||| || |||| Sbjct 3418 GACTACCTTCATATGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCA 3359 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 106250 | | ||| ||| || || ||||| || | || | | | |||| || | Sbjct 3358 AAGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTT 3299 Query 106251 CAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 106310 || | | |||||| || | ||| |||| || | |||||| || || | ||| || | Sbjct 3298 CATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTG 3239 Query 106311 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATG 106369 |||| ||||||||||| || ||| || ||| ||| |||||| |||| || || Sbjct 3238 GTCTATGTCGCATATTGGAGTTTTTAGCT-TCTGGAACTGGATAATAATTGACATCTATA 3180 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 | | ||||| |||| ||| | ||| ||||| | ||| | | |||||| ||| | Sbjct 3179 ATTTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTAC 3120 Query 106430 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 106489 || | | || ||||| ||| || | | || || || || ||||| || || || Sbjct 3119 GTTCTA---TCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCT 3063 Query 106490 GTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 ||||| || || ||||| |||| ||||||||||| | || || ||||| | Sbjct 3062 ACTTCATCTACTGAT--GTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTG 3005 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | || | ||| || || ||||||||| |||| || | ||| ||||| | |||| | || | Sbjct 3004 TTCCTAGATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAG 2945 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGG 106667 | || || || |||| | | ||| |||||||| | | | ||| ||| || Sbjct 2944 TGCCTGTTTCAACTTGTGCTTCTACAATAGCCTTCCATAAAACTTGTGCTTTTAC-TTG- 2887 Query 106668 CGTTGGC---CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 106724 || | | | || ||| |||||| || |||||||||||||| || ||| Sbjct 2886 -TTTAACAAATCTTTTTTCATTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCC 2828 Query 106725 CCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCT 106784 || | | ||| || | | ||||| | | | ||| | || | | Sbjct 2827 AACAATCTGCCAAACCAGGACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTT 2768 Query 106785 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAG 106844 |||| | ||||| || | ||||| ||||| | | |||| | || ||| ||| Sbjct 2767 CAACTCTTTTCATAAACAAATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAA 2708 Query 106845 CCTCTTCGTCACC----TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 106900 | ||||| | ||| || || || | || || ||||| | | ||| | ||| Sbjct 2707 CTTCTTCTTTACCAGTATTCTTT--TTCAGATCTAAA--AACTCAAACACATCTGAATGC 2652 Query 106901 CATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACA 106954 ||||| || | ||| || || | || || | ||||| ||| |||||| |||| Sbjct 2651 CATGGTTCTAAATATACAGC---AAATGCCCCTGGACGCTTGTTACCACCTTGATCTACA 2595 Query 106955 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 107014 || | |||||| |||| |||| | | |||||| | || |||| |||| ||||||| Sbjct 2594 TATCTGGCTGTGCTGTTATATACTCTTAACATTGGGACAAGTCCATTTGATACACCATTT 2535 Query 107015 GTCCCCCGAATACGAGATTTA---TTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || |||| || || || |||| | | || | || | |||||| || Sbjct 2534 GTGCCAGCTATAC---ATGTACCTTTAGCTCGGATACAGTGAACATGAAGCCCAATGCCA 2478 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || || | || || || ||||| | | ||||| |||| || || | || | Sbjct 2477 CCTGCAGATTTAGATATCAAGGCACATTGTTTCAGAGTGTCATATATTCCCTCAATACTG 2418 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || || || |||| | | ||| ||| |||| || |||||||| ||| ||||| Sbjct 2417 TCATCTTTCATGGCCAATAAGAAACAAGATGACAATTGAGGTCTTGGAGTAGCAGCAGAA 2358 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 107250 || | || || | |||||| |||| |||| | | |||| | ||| || | | Sbjct 2357 AATAAAGTAGGACTGGCGTGAGTGAA-ATACTTCTCAGACAATAAATTGTAGGTGTTAAT 2299 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | |||||||||||||| || || || || || || |||||||| | ||| | ||| || Sbjct 2298 TGCTGAATCAATGTCTTCTCCATGTATACCAATAGCTACACGCATTAGCATATGTTGTGG 2239 Query 107311 T 107311 | Sbjct 2238 T 2238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589485518493160